Update POM metadata; add deployment target

pom.xml

@@ -6,7 +6,8 @@
   <packaging>jar</packaging>
   <name>Common Workflow Language SDK</name>
   <description><![CDATA[This project contains Java objects and utilities  auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.]]></description>
-  <version>1.2.0-SNAPSHOT</version>
+  <version>2.0.0</version>
+  <url>https://www.commonwl.org/</url>
   <properties>
     <commonslang.version>3.19.0</commonslang.version>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
@@ -18,6 +19,18 @@
       <url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
     </license>
   </licenses>
+  <developers>
+    <developer>
+      <name>Michael R. Crusoe</name>
+      <email>mrc@commonwl.org</email>
+      <organization>Common Workflow Language, a member project of Software Freedom Conservancy, Inc.</organization>
+    </developer>
+  </developers>
+  <scm>
+    <connection>scm:git:git://github.com/common-workflow-language/cwljava.git</connection>
+    <developerConnection>scm:git:ssh://github.com/common-workflow-language/cwljava.git</developerConnection>
+    <url>https://github.com/common-workflow-language/cwljava/tree/cwl-1.2.0/</url>
+  </scm>
   <build>
     <pluginManagement>
       <plugins>
@@ -51,9 +64,14 @@
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-javadoc-plugin</artifactId>
-        <version>3.12.0</version>
-        <configuration>
-                </configuration>
+	<version>3.12.0</version>
+	<executions><execution><id>attach-javadocs</id><goals><goal>jar</goal></goals></execution></executions>
+      </plugin>
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-source-plugin</artifactId>
+	<version>3.3.1</version>
+	<executions><execution><id>attach-sources</id><goals><goal>jar-no-fork</goal></goals></execution></executions>
       </plugin>
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
@@ -107,6 +125,73 @@
     </dependency>
   </dependencies>
   <profiles>
+    <profile>
+      <id>deployment</id>
+      <build>
+        <plugins>
+          <plugin>
+            <groupId>org.apache.maven.plugins</groupId>
+            <artifactId>maven-javadoc-plugin</artifactId>
+            <version>3.10.1</version>
+            <executions>
+              <execution>
+                <id>attach-javadocs</id>
+                <goals>
+                  <goal>jar</goal>
+                </goals>
+              </execution>
+            </executions>
+          </plugin>
+          <plugin>
+            <groupId>org.apache.maven.plugins</groupId>
+            <artifactId>maven-source-plugin</artifactId>
+            <version>3.3.1</version>
+            <executions>
+              <execution>
+                <id>attach-sources</id>
+                <goals>
+                  <goal>jar-no-fork</goal>
+                </goals>
+              </execution>
+            </executions>
+          </plugin>
+          <plugin>
+            <groupId>org.apache.maven.plugins</groupId>
+            <artifactId>maven-gpg-plugin</artifactId>
+            <version>3.2.8</version>
+            <configuration>
+              <!-- Optional: specify which key to use -->
+              <keyname>${gpg.keyname}</keyname>
+              <!-- Prevent gpg from using pinentry programs -->
+              <gpgArguments>
+                <arg>--pinentry-mode</arg>
+                <arg>loopback</arg>
+              </gpgArguments>
+            </configuration>
+            <executions>
+              <execution>
+                <id>sign-artifacts</id>
+                <phase>verify</phase>
+                <goals>
+                  <goal>sign</goal>
+                </goals>
+              </execution>
+            </executions>
+          </plugin>
+          <plugin>
+            <groupId>org.sonatype.central</groupId>
+            <artifactId>central-publishing-maven-plugin</artifactId>
+            <version>0.9.0</version>
+            <extensions>true</extensions>
+            <configuration>
+              <publishingServerId>central</publishingServerId>
+              <autoPublish>true</autoPublish>
+              <waitUntil>uploaded</waitUntil>
+            </configuration>
+          </plugin>
+        </plugins>
+      </build>
+    </profile>
     <profile>
       <id>github</id>
       <activation>

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandInputParameter.java

@@ -65,7 +65,7 @@ public interface CommandInputParameter extends InputParameter, Saveable {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return "null" in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool
@@ -127,7 +127,7 @@ public interface CommandInputParameter extends InputParameter, Saveable {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * "contents" field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandInputParameterImpl.java

@@ -86,7 +86,7 @@ public java.util.Optional<String> getLabel() {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return &quot;null&quot; in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool
@@ -168,7 +168,7 @@ public Object getFormat() {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * &quot;contents&quot; field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandInputRecordField.java

@@ -80,7 +80,7 @@ public interface CommandInputRecordField extends InputRecordField, CommandLineBi
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return "null" in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool
@@ -135,7 +135,7 @@ public interface CommandInputRecordField extends InputRecordField, CommandLineBi
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * "contents" field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandInputRecordFieldImpl.java

@@ -111,7 +111,7 @@ public java.util.Optional<String> getLabel() {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return &quot;null&quot; in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool
@@ -181,7 +181,7 @@ public Object getFormat() {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * &quot;contents&quot; field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandLineBinding.java

@@ -21,8 +21,8 @@
 * Auto-generated interface for <I>https://w3id.org/cwl/cwl#CommandLineBinding</I><BR>This interface is implemented by {@link CommandLineBindingImpl}<BR> <BLOCKQUOTE>
 
  When listed under `inputBinding` in the input schema, the term
- "value" refers to the the corresponding value in the input object.  For
- binding objects listed in `CommandLineTool.arguments`, the term "value"
+ &quot;value&quot; refers to the the corresponding value in the input object.  For
+ binding objects listed in `CommandLineTool.arguments`, the term &quot;value&quot;
  refers to the effective value after evaluating `valueFrom`.
 
  The binding behavior when building the command line depends on the data
@@ -71,7 +71,7 @@ public interface CommandLineBinding extends InputBinding, Saveable {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * &quot;contents&quot; field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandLineBindingImpl.java

@@ -24,8 +24,8 @@
 * Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandLineBinding</I><BR> <BLOCKQUOTE>
 
  When listed under `inputBinding` in the input schema, the term
- "value" refers to the the corresponding value in the input object.  For
- binding objects listed in `CommandLineTool.arguments`, the term "value"
+ &quot;value&quot; refers to the the corresponding value in the input object.  For
+ binding objects listed in `CommandLineTool.arguments`, the term &quot;value&quot;
  refers to the effective value after evaluating `valueFrom`.
 
  The binding behavior when building the command line depends on the data
@@ -82,7 +82,7 @@ public java.util.Map<String, Object> getExtensionFields() {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * &quot;contents&quot; field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandLineTool.java

@@ -150,7 +150,7 @@ public interface CommandLineTool extends Process, Saveable {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stdin</I><BR>
    * <BLOCKQUOTE>
-   * A path to a file whose contents must be piped into the command's
+   * A path to a file whose contents must be piped into the command&#x27;s
    * standard input stream.
    *    * </BLOCKQUOTE>
    */
@@ -159,7 +159,7 @@ public interface CommandLineTool extends Process, Saveable {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stderr</I><BR>
    * <BLOCKQUOTE>
-   * Capture the command's standard error stream to a file written to
+   * Capture the command&#x27;s standard error stream to a file written to
    * the designated output directory.
    * 
    * If `stderr` is a string, it specifies the file name to use.
@@ -175,7 +175,7 @@ public interface CommandLineTool extends Process, Saveable {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stdout</I><BR>
    * <BLOCKQUOTE>
-   * Capture the command's standard output stream to a file written to
+   * Capture the command&#x27;s standard output stream to a file written to
    * the designated output directory.
    * 
    * If `stdout` is a string, it specifies the file name to use.

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandLineToolImpl.java

@@ -216,7 +216,7 @@ public java.util.Optional<java.util.List<Object>> getArguments() {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stdin</I><BR>
    * <BLOCKQUOTE>
-   * A path to a file whose contents must be piped into the command's
+   * A path to a file whose contents must be piped into the command&#x27;s
    * standard input stream.
    *    * </BLOCKQUOTE>
    */
@@ -230,7 +230,7 @@ public Object getStdin() {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stderr</I><BR>
    * <BLOCKQUOTE>
-   * Capture the command's standard error stream to a file written to
+   * Capture the command&#x27;s standard error stream to a file written to
    * the designated output directory.
    * 
    * If `stderr` is a string, it specifies the file name to use.
@@ -251,7 +251,7 @@ public Object getStderr() {
   /**
    * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineTool/stdout</I><BR>
    * <BLOCKQUOTE>
-   * Capture the command's standard output stream to a file written to
+   * Capture the command&#x27;s standard output stream to a file written to
    * the designated output directory.
    * 
    * If `stdout` is a string, it specifies the file name to use.

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputBinding.java

@@ -42,7 +42,7 @@ public interface CommandOutputBinding extends LoadContents, Saveable {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * "contents" field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 
@@ -75,9 +75,9 @@ public interface CommandOutputBinding extends LoadContents, Saveable {
    * match and return files/directories which actually exist.
    * 
    * If the value of glob is a relative path pattern (does not
-   * begin with a slash '/') then it is resolved relative to the
+   * begin with a slash &#x27;/&#x27;) then it is resolved relative to the
    * output directory.  If the value of the glob is an absolute
-   * path pattern (it does begin with a slash '/') then it must
+   * path pattern (it does begin with a slash &#x27;/&#x27;) then it must
    * refer to a path within the output directory.  It is an error
    * if any glob resolves to a path outside the output directory.
    * Specifically this means globs that resolve to paths outside the output

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputBindingImpl.java

@@ -53,7 +53,7 @@ public java.util.Map<String, Object> getExtensionFields() {
    * Only valid when `type: File` or is an array of `items: File`.
    * 
    * Read up to the first 64 KiB of text from the file and place it in the
-   * "contents" field of the file object for use by expressions.
+   * &quot;contents&quot; field of the file object for use by expressions.
    *    * </BLOCKQUOTE>
    */
 
@@ -96,9 +96,9 @@ public java.util.Optional<LoadListingEnum> getLoadListing() {
    * match and return files/directories which actually exist.
    * 
    * If the value of glob is a relative path pattern (does not
-   * begin with a slash '/') then it is resolved relative to the
+   * begin with a slash &#x27;/&#x27;) then it is resolved relative to the
    * output directory.  If the value of the glob is an absolute
-   * path pattern (it does begin with a slash '/') then it must
+   * path pattern (it does begin with a slash &#x27;/&#x27;) then it must
    * refer to a path within the output directory.  It is an error
    * if any glob resolves to a path outside the output directory.
    * Specifically this means globs that resolve to paths outside the output

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputParameter.java

@@ -65,7 +65,7 @@ public interface CommandOutputParameter extends OutputParameter, Saveable {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return "null" in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputParameterImpl.java

@@ -86,7 +86,7 @@ public java.util.Optional<String> getLabel() {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return &quot;null&quot; in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputRecordField.java

@@ -80,7 +80,7 @@ public interface CommandOutputRecordField extends OutputRecordField, Saveable {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return "null" in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool

src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputRecordFieldImpl.java

@@ -111,7 +111,7 @@ public java.util.Optional<String> getLabel() {
    * `path` or `location` and `basename` fields set, or an array consisting
    * of strings or File or Directory objects.  It is legal to reference an
    * unchanged File or Directory object taken from input as a secondaryFile.
-   * The expression may return "null" in which case there is no secondaryFile
+   * The expression may return &quot;null&quot; in which case there is no secondaryFile
    * from that expression.
    * 
    * To work on non-filename-preserving storage systems, portable tool

src/main/java/org/commonwl/cwlsdk/cwl1_1/Directory.java

@@ -109,8 +109,8 @@ public interface Directory extends Saveable {
    * `opendir(2)` syscall.
    * 
    * If the `path` contains [POSIX shell metacharacters](http://pubs.opengroup.org/onlinepubs/9699919799/utilities/V3_chap02.html#tag_18_02)
-   * (`|`,`&`, `;`, `<`, `>`, `(`,`)`, `$`,`` ` ``, `\`, `"`, `'`,
-   * `<space>`, `<tab>`, and `<newline>`) or characters
+   * (`|`,`&amp;`, `;`, `&lt;`, `&gt;`, `(`,`)`, `$`,`` ` ``, `\`, `&quot;`, `&#x27;`,
+   * `&lt;space&gt;`, `&lt;tab&gt;`, and `&lt;newline&gt;`) or characters
    * [not allowed](http://www.iana.org/assignments/idna-tables-6.3.0/idna-tables-6.3.0.xhtml)
    * for [Internationalized Domain Names for Applications](https://tools.ietf.org/html/rfc6452)
    * then implementations may terminate the process with a

src/main/java/org/commonwl/cwlsdk/cwl1_1/DirectoryImpl.java

@@ -130,8 +130,8 @@ public java.util.Optional<String> getLocation() {
    * `opendir(2)` syscall.
    * 
    * If the `path` contains [POSIX shell metacharacters](http://pubs.opengroup.org/onlinepubs/9699919799/utilities/V3_chap02.html#tag_18_02)
-   * (`|`,`&`, `;`, `<`, `>`, `(`,`)`, `$`,`` ` ``, `\`, `"`, `'`,
-   * `<space>`, `<tab>`, and `<newline>`) or characters
+   * (`|`,`&amp;`, `;`, `&lt;`, `&gt;`, `(`,`)`, `$`,`` ` ``, `\`, `&quot;`, `&#x27;`,
+   * `&lt;space&gt;`, `&lt;tab&gt;`, and `&lt;newline&gt;`) or characters
    * [not allowed](http://www.iana.org/assignments/idna-tables-6.3.0/idna-tables-6.3.0.xhtml)
    * for [Internationalized Domain Names for Applications](https://tools.ietf.org/html/rfc6452)
    * then implementations may terminate the process with a