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Copilot AI commented Nov 21, 2025

Per discussion in #[issue_number], BABS should be listed as an Additional Associated Tool alongside Nipoppy as an alternative approach for reproducible neuroimaging software management.

Changes

  • Added BABS entry to Additional Associated Tools section in /content/resources/tools/_index.md
  • Linked to PennLINC/babs repository and the Imaging Neuroscience paper (https://doi.org/10.1162/imag_a_00074)
  • Positioned as first item in the list for discoverability

BABS (BIDS App Bootstrap System) streamlines neuroimaging processing workflows with containerized BIDS Apps, addressing similar problems as Nipoppy through a different approach.

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Original prompt

This section details on the original issue you should resolve

<issue_title>Add BABS to Additional tools</issue_title>
<issue_description>in the Repronim all-call, we discussed possibly adding BABS. @dnkennedy can you confirm we want to do this?</issue_description>

Comments on the Issue (you are @copilot in this section)

@asmacdo also the imaging neuroscience paper: https://doi.org/10.1162/imag_a_00074 @juliebates Regarding the core tool question, according to my meeting notes from 7/29/25, I thought DK said BABS was not yet a Core Tool, but should be confirmed or refuted by @dnkennedy @dnkennedy So, IMHO, BABS and NiPoppy solve very similar problems (@jbpoline or others should correct me if I'm incorrect). Nipoppy is claimed as a core tool, and has a nice tutorial associated with it (https://repronim.org/resources/tutorials/nipoppy/).

My feeling is to call BABS an Associated tool (or whatever that sub list is called), and see if we can generate a parallel tutorial "Streamlining Neuroimaging Processing with BABS", and these can then be 2 ways for users to deal with "Reproducible neuroimaging principles: 3. Software management."

We (well, I at least) still need to know better when a user comes to us and says 'they want to do software management better (in the ReproNim way)' what do we need to know about them in order to recommend Tool1 or Tool2.

Anyway, that's my 2 cents.

I guess my temporary solution to what is or isn't a Core tool is if it has a nice, working, 'easy enough for the qualified person to do' tutorial associated with it. But this can be discussed further. </comment_new>


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Copilot AI and others added 2 commits November 21, 2025 19:32
Co-authored-by: yarikoptic <39889+yarikoptic@users.noreply.github.com>
Co-authored-by: yarikoptic <39889+yarikoptic@users.noreply.github.com>
Copilot AI changed the title [WIP] Add BABS to additional tools Add BABS to Additional Associated Tools Nov 21, 2025
Copilot AI requested a review from yarikoptic November 21, 2025 19:35
Copilot finished work on behalf of yarikoptic November 21, 2025 19:35
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asmacdo commented Nov 24, 2025

Already completed.

@asmacdo asmacdo closed this Nov 24, 2025
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Add BABS to Additional tools

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