Tests

Claude/codebase review refactor plan 01 ke4 bz x3gw ywec fj wb rs xs5 #29

	name: Tests

	on:
	push:
	branches: [ main, master, v2.0 ]
	pull_request:
	branches: [ main, master, v2.0 ]

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest, windows-latest]
	python-version: ['3.8', '3.9', '3.10', '3.11']

	steps:
	- uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install pytest pytest-cov
	pip install -e .

	- name: Run tests
	run: \|
	pytest tests/ -v --cov=connectomics --cov-report=xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	file: ./coverage.xml
	flags: unittests
	name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}

	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Install linters
	run: \|
	python -m pip install --upgrade pip
	pip install black flake8 isort mypy

	- name: Run black
	run: black --check connectomics/

	- name: Run flake8
	run: flake8 connectomics/ --max-line-length=100

	- name: Run isort
	run: isort --check connectomics/

	- name: Run mypy
	run: mypy connectomics/ --ignore-missing-imports

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