Merge branch 'main' of https://github.com/LucvZon/EMC-Viroscience.github.io

Author: LucvZon

.github/workflows/deploy.yml

@@ -2,63 +2,45 @@
 
 name: Deploy Quarto Website
 
-# Run on pushes to the main branch and allow manual runs
 on:
   push:
-    branches: [main] # Or master, depending on your default branch name
+    branches: [main]
   workflow_dispatch:
 
-# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
 permissions:
-  contents: read # Need read to check out the code
-  pages: write    # Need write to deploy to GitHub Pages
-  id-token: write # Need for OIDC token authentication for deployment
+  contents: read
+  pages: write
+  id-token: write
 
-# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
-# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
 concurrency:
   group: "pages"
   cancel-in-progress: false
 
 jobs:
   build-and-deploy:
-    runs-on: ubuntu-latest # Use the latest Ubuntu runner
+    runs-on: ubuntu-latest
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4 # Checks out your repository code
+        uses: actions/checkout@v4
 
       - name: Set up Quarto
-        uses: quarto-dev/quarto-cli-action@v2
+        uses: quarto-dev/quarto-actions/setup@v2
         with:
-          # Optional: Specify a Quarto version, or leave blank for latest
-          # version: 1.4.549 
-          version: latest
-
-      # Optional: Add steps here to install R, Python, or other dependencies
-      # if your Quarto documents require code execution.
-      # Example for Python:
-      # - name: Set up Python
-      #   uses: actions/setup-python@v5
-      #   with:
-      #     python-version: '3.11' # Specify your Python version
-      # - name: Install Python dependencies
-      #   run: pip install -r requirements.txt # If you have a requirements file
+          version: 1.6.40 # Keep this specific version
 
       - name: Render Quarto Website
-        run: quarto render # Renders the website, output goes to docs/
+        run: quarto render
 
       - name: Setup Pages
-        id: pages # Used for referencing outputs later
-        uses: actions/configure-pages@v5 # Configures GitHub Pages options
+        id: pages
+        uses: actions/configure-pages@v5
 
       - name: Upload artifact
-        uses: actions/upload-pages-artifact@v3 # Uploads the rendered site content
+        uses: actions/upload-pages-artifact@v3
         with:
-          # Upload the entire contents of the output directory
-          path: ./docs 
+          path: ./docs
 
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v4 # Deploys the artifact to GitHub Pages
-        # This action automatically handles authentication using the GITHUB_TOKEN
+        uses: actions/deploy-pages@v4