EMC-Viroscience
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- nanopore-amplicon-analysis-manual Public
This is a manual for viral amplicon data analysis of Nanopore long reads
EMC-Viroscience/nanopore-amplicon-analysis-manual’s past year of commit activity - illumina-metagenomic-analysis-manual Public
This is a manual for viral metagenomic data analysis of Illumina short reads
EMC-Viroscience/illumina-metagenomic-analysis-manual’s past year of commit activity - bird-surveillance-dashboard Public
Source code for the bird surveillance dashboard based on the Pathogen Portal data.
EMC-Viroscience/bird-surveillance-dashboard’s past year of commit activity - Genomic-monitoring-mpox-in-Burundi Public Forked from BOM86/Genomic-monitoring-mpox-in-Burundi
Genomic monitoring and tracking of mpox virus Clade Ib after the introduction into Burundi at the end of July until mid-September, 2024
EMC-Viroscience/Genomic-monitoring-mpox-in-Burundi’s past year of commit activity - Worp_etal_Global_Sewage_Virome Public Forked from nathalieworp/Worp_etal_Global_Sewage_Virome
snakemake workflow and scripts for global urban virome wastewater study (Manuscript in submission Worp et al, 2025)
EMC-Viroscience/Worp_etal_Global_Sewage_Virome’s past year of commit activity - USUV_submission Public Forked from divprasad/USUV_submission
Usutu virus submission made easy—this structured template is designed for programmatically submitting raw read samples, runs, and experiment metadata to ENA. Converts tables to XML, supports adding or modifying metadata, retrieves submission receipts, and includes metadata accessions.
EMC-Viroscience/USUV_submission’s past year of commit activity - updated_illumina_workflow Public Forked from divprasad/updated_illumina_workflow
A Snakemake workflow for processing Illumina sequencing data, tested and validated on wastewater metagenomics.
EMC-Viroscience/updated_illumina_workflow’s past year of commit activity - Rashidi_et_al-2024-COVID19-brain-apoptosis Public Forked from HerpeslabNL/Rashidi_et_al-2024-COVID19-brain-apoptosis
Scripts and Data for Rashidi et al 2024 Manuscript
EMC-Viroscience/Rashidi_et_al-2024-COVID19-brain-apoptosis’s past year of commit activity
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