feat(medcat-service): Run MCP server for medcat using gradio #666
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| name: medcat-service - Build Images | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - 'medcat-service/v*.*.*' # e.g., medcat-serice/v0.1.1 | |
| pull_request: | |
| paths: | |
| - 'medcat-v2/**' | |
| - 'medcat-service/**' | |
| - '.github/workflows/medcat-service**' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| working-directory: ./medcat-service | |
| jobs: | |
| build: | |
| if: github.event.pull_request.user.login != 'dependabot[bot]' && github.repository == 'CogStack/cogstack-nlp' | |
| runs-on: ubuntu-latest | |
| outputs: | |
| image_version: ${{ steps.meta.outputs.version }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: 🧹 Free up disk space | |
| run: | | |
| df -h # Optional: Check space before build | |
| # Remove large, unnecessary packages/tools | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /usr/share/swift | |
| sudo rm -rf /usr/share/rust | |
| sudo rm -rf /usr/share/powershell | |
| # Remove cached tools and files | |
| sudo apt-get clean | |
| df -h # Optional: Check space before build | |
| - name: Log in to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Extract metadata (tags, labels) for Docker MedCATservice | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: cogstacksystems/medcat-service | |
| tags: | | |
| # set latest tag for default branch | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| # Include all default tags | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=tag | |
| type=ref,event=pr | |
| type=sha | |
| # Create version tag based on tag prefix | |
| type=match,pattern=medcat-service/v(\d+\.\d+\.\d+),group=1 | |
| flavor: latest=false | |
| - name: Make medact-v2 available within build | |
| run: cp -r ../medcat-v2 medcat-v2 | |
| - name: Build and push Docker MedCATservice image | |
| id: docker_build | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./medcat-service/ | |
| push: true | |
| allow: network.host | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=registry,ref=cogstacksystems/medcat-service:buildcache | |
| cache-to: type=registry,ref=cogstacksystems/medcat-service:buildcache,mode=max | |
| build-args: | | |
| REINSTALL_CORE_FROM_LOCAL=true | |
| - name: Extract metadata (tags, labels) for Docker MedCATservice-gpu | |
| id: meta-gpu | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: cogstacksystems/medcat-service-gpu | |
| tags: | | |
| # set latest tag for default branch | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| # Include all default tags | |
| type=schedule | |
| type=ref,event=branch | |
| type=ref,event=tag | |
| type=ref,event=pr | |
| type=sha | |
| # Create version tag based on tag prefix | |
| type=match,pattern=medcat-service/v(\d+\.\d+\.\d+),group=1 | |
| flavor: latest=false | |
| build-args: | | |
| REINSTALL_CORE_FROM_LOCAL=true | |
| - name: Build and push Docker Jupyter singleuser image with GPU support | |
| id: docker_build_gpu | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./medcat-service/ | |
| file : "./medcat-service/Dockerfile_gpu" | |
| allow: network.host | |
| tags: ${{ steps.meta-gpu.outputs.tags }} | |
| labels: ${{ steps.meta-gpu.outputs.labels }} | |
| push: true | |
| cache-from: type=registry,ref=cogstacksystems/medcat-service-gpu:buildcache | |
| cache-to: type=registry,ref=cogstacksystems/medcat-service-gpu:buildcache,mode=max | |
| build-args: | | |
| REINSTALL_CORE_FROM_LOCAL=true | |
| - name: Image digest | |
| run: echo ${{ steps.docker_build.outputs.digest }} | |
| working-directory: "./" | |
| integration_test: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| strategy: | |
| matrix: | |
| variant: [v1, v2, DeID] | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v6 | |
| - name: Run Test with example model pack | |
| run: | | |
| echo "🧪 Running Examples test..." | |
| export IMAGE_TAG=${{ needs.build.outputs.image_version }} # Improve by running exact digest instead | |
| echo "Running with image tag ${IMAGE_TAG} and variant ${{ matrix.variant }}" | |
| bash scripts/test_examples.sh ${{ matrix.variant }} | |
| - name: Report test result | |
| if: always() | |
| run: | | |
| if [ $? -eq 0 ]; then | |
| echo "✅ Integration test PASSED" | |
| else | |
| echo "❌ Integration test FAILED" | |
| exit 1 | |
| fi |