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Merge tag '1.1.7' into debian
1.1.7 (December 17, 2018) * FIX: Copy node list before generating a flat graph (nipy#2828) * FIX: Update pytest req'd version to 3.6 (nipy#2827) * FIX: Set ResourceMonitor.fname to an absolute path (nipy#2824) * FIX: Order of SPM.NewSegment channel_info boolean tuple is (Field, Corrected) (nipy#2817) * FIX: Indices were swapped for memory and cpu profile data (nipy#2816) * FIX: ``status_callback`` not called with ``stop_on_first_crash`` (nipy#2810) * FIX: Change undefined ScriptError on LFS plugin to IOError (nipy#2803) * ENH: Add NaN failure mode to CompCor interfaces (nipy#2819) * ENH: Enable cnr_maps and residuals outputs for FSL eddy (nipy#2750) * ENH: Improve ``str2bool`` + doctests (nipy#2807) * TST: Improve py.test configuration of doctests (nipy#2802) * DOC: Update DOI badge to point to all versions (nipy#2804) * MAINT: Offload interfaces with help formatting (nipy#2797) * MAINT: Reduce minimal code redundancy in filemanip.get_dependencies (nipy#2782) * MAINT: Delayed imports to reduce import time (nipy#2809) ...
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‎.circleci/config.yml‎

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_machine_kwds: &machine_kwds
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image: circleci/classic:201710-02
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image: circleci/classic:201808-01
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_store_artifacts_kwds: &store_artifacts_kwds
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path: /home/circleci/work/tests
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pip install dist/nipype-*-py2.py3-none-any.whl
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# Futures should not install in Python 3
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test $(pip show futures 2>/dev/null | wc -l) = "0"
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- run:
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name: Validate Python 3.7 installation
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command: |
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pyenv local 3.7.0
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pip install --upgrade pip
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# Pre-install a version of numpy that will not pass
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pip install numpy==1.15.0
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pip install dist/nipype-*-py2.py3-none-any.whl
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# Numpy should be upgraded to >= 1.15.3
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test "$(pip show numpy | grep Version)" \> "Version: 1.15.2"
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- store_artifacts:
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‎.travis.yml‎

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- travis_retry git clone https://github.com/INCF/pybids.git ${HOME}/pybids &&
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- travis_retry git clone -b 0.6.5 https://github.com/INCF/pybids.git ${HOME}/pybids && pip install -e ${HOME}/pybids
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- travis_retry pip install $EXTRA_PIP_FLAGS -e .[$NIPYPE_EXTRAS]

‎.zenodo.json‎

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"affiliation": "Department of Psychology, Stanford University",
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"name": "Waskom, Michael"
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},
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{
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"affiliation": "Developer",
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"name": "Clark, Daniel",
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"orcid": "0000-0002-8121-8954"
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},
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{
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"affiliation": "Shattuck Lab, UCLA Brain Mapping Center",
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"name": "Wong, Jason"
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{
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"name": "Loney, Fred"
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"name": "Modat, Marc"
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},
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{
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"name": "Modat, Marc"
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"name": "Loney, Fred"
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},
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{
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"affiliation": "Department of Electrical and Computer Engineering, Johns Hopkins University",
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"name": "Dewey, Blake E",
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"orcid": "0000-0003-4554-5058"
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"affiliation": "Developer",
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"name": "Clark, Daniel",
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"orcid": "0000-0002-8121-8954"
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},
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{
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"affiliation": "National Institute of Mental Health",
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"name": "Nielson, Dylan M.",
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"orcid": "0000-0003-4613-6643"
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},
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{
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"affiliation": "Department of Electrical and Computer Engineering, Johns Hopkins University",
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"name": "Dewey, Blake E",
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"orcid": "0000-0003-4554-5058"
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},
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{
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"name": "Madison, Cindee"
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{
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"affiliation": "Molecular Imaging Research Center, CEA, France",
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"name": "Bougacha, Salma"
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{
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"affiliation": "National Institutes of Health",
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"name": "Clark, Michael G. "
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},
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{
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"affiliation": "Dartmouth College",
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"name": "Visconti di Oleggio Castello, Matteo",
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"orcid": "0000-0001-7931-5272"
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},
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{
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"affiliation": "National Institutes of Health",
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"name": "Clark, Michael G. "
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},
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{
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"affiliation": "Mayo Clinic, Neurology, Rochester, MN, USA",
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"name": "Dayan, Michael",
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{
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"name": "Berleant, Shoshana"
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},
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{
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"affiliation": "MIT",
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"name": "Kaczmarzyk, Jakub",
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"orcid": "0000-0002-5544-7577"
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},
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{
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"affiliation": "INRIA",
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"name": "Varoquaux, Gael",
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"orcid": "0000-0003-1076-5122"
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},
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{
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"affiliation": "UC San Diego",
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"name": "Cipollini, Ben",
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"name": "DuPre, Elizabeth",
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"orcid": "0000-0003-1358-196X"
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},
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{
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"affiliation": "MIT",
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"name": "Kaczmarzyk, Jakub",
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"orcid": "0000-0002-5544-7577"
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},
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{
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"name": "Moloney, Brendan"
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{
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"affiliation": "INRIA",
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"name": "Varoquaux, Gael",
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"orcid": "0000-0003-1076-5122"
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},
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{
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"affiliation": "Institute for Biomedical Engineering, ETH and University of Zurich",
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"name": "Horea, Christian",
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"orcid": "0000-0001-7037-2449"
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},
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{
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"affiliation": "Athena EPI, Inria Sophia-Antipolis",
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"name": "Wassermann , Demian",
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"name": "Hanke, Michael",
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{
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"affiliation": "Institute for Biomedical Engineering, ETH and University of Zurich",
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"name": "Horea, Christian",
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},
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"affiliation": "Vrije Universiteit, Amsterdam",
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{
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"name": "Mordom, David"
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},
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"affiliation": "Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland",
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"name": "Gillman, Ashley",
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"name": "Pauli, Wolfgang M.",
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"orcid": "0000-0002-0966-0254"
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{
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"affiliation": "Duke University",
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"name": "Iqbal, Shariq",
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"orcid": "0000-0003-2766-8425"
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"affiliation": "Nathan s Kline institute for psychiatric research",
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"name": "Forbes, Jessica"
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{
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"affiliation": "Duke University",
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"name": "Iqbal, Shariq",
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"orcid": "0000-0003-2766-8425"
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},
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"name": "Schwartz, Yannick"
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"affiliation": "Harvard University - Psychology",
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"affiliation": "SRI International",
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"affiliation": "Harvard University - Psychology",
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"name": "Kastman, Erik",
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"orcid": "0000-0001-7221-9042"
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},
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{
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"affiliation": "Washington University in St Louis",
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"name": "Acland, Benjamin",
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"orcid": "0000-0001-6392-6634"
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{
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"affiliation": "Child Mind Institute",
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"name": "Giavasis, Steven"
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"affiliation": "University of Zurich",
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"name": "Liem, Franz",
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"orcid": "0000-0003-0646-4810"
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"affiliation": "UniversityHospital Heidelberg, Germany",
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"name": "Erickson, Drew"
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"name": "K\u00fcttner, Ren\u00e9"
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"name": "K\u00fcttner, Ren\u00e9"
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"name": "Blair, Ross"
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{
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"name": "Haselgrove, Christian"
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},
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"affiliation": "1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montr\u00e9al, 3801 University Street, WB-208, H3A 2B4, Qu\u00e9bec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.",
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"name": "Glatard, Tristan",
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"orcid": "0000-0003-2767-6310"
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"affiliation": "Institute of Imaging & Computer Vision, RWTH Aachen University, Germany",
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"name": "Weninger, Leon"
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"affiliation": "GIGA Institute",
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"orcid": "0000-0001-5549-1861"
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"name": "Salvatore, John"
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"name": "Hinds, Oliver"
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"name": "Cooper, Gavin",
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"affiliation": "Institute of Imaging & Computer Vision, RWTH Aachen University, Germany",
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"orcid": "0000-0003-2076-5329"
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{
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"affiliation": "University of Texas at Austin",
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"name": "De La Vega, Alejandro",
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"orcid": "0000-0001-9062-3778"
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‎README.rst‎

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.. image:: https://codecov.io/gh/nipy/nipype/branch/master/graph/badge.svg
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:target: https://codecov.io/gh/nipy/nipype
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.. image:: https://www.codacy.com/project/badge/182f27944c51474490b369d0a23e2f32
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:target: https://www.codacy.com/app/krzysztof-gorgolewski/nipy_nipype
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.. image:: https://api.codacy.com/project/badge/Grade/452bfc0d4de342c99b177d2c29abda7b
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:target: https://www.codacy.com/app/nipype/nipype?utm_source=github.com&utm_medium=referral&utm_content=nipy/nipype&utm_campaign=Badge_Grade
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:target: http://gitter.im/nipy/nipype
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:alt: Chat
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.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.596855.svg
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:target: https://doi.org/10.5281/zenodo.596855
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:alt: Citable DOI
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Current neuroimaging software offer users an incredible opportunity to
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analyze data using a variety of different algorithms. However, this has

‎doc/_static/nipy-logo-bg-138x120.png‎

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‎doc/_templates/navbar.html‎

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