Merge remote-tracking branch 'origin/r-conda' into fix-docbuilding-release

Author: tobiasdiez

environment-3.11-linux-aarch64.yml

@@ -1,12 +1,13 @@
 name: sage-dev
 # Generated by conda-lock.
 # platform: linux-aarch64
-# input_hash: 227cdf1510716b45d3b6e0f49e8eb671fc72cd7bbe6a4bf19b88aefbcfb20580
+# input_hash: 8165cc64ec372e3bcd1c7a733f8a26f530cf244bfeb781d0b42ed6e6131491b9
 
 channels:
   - conda-forge
 dependencies:
   - _openmp_mutex=4.5=2_gnu
+  - _r-mutex=1.0.1=anacondar_1
   - alabaster=1.0.0=pyhd8ed1ab_1
   - alsa-lib=1.2.14=h86ecc28_0
   - annotated-types=0.7.0=pyhd8ed1ab_1
@@ -21,9 +22,9 @@ dependencies:
   - backports.tarfile=1.2.0=pyhd8ed1ab_1
   - bdw-gc=8.2.8=h5ad3122_2
   - beautifulsoup4=4.13.4=pyha770c72_0
-  - binutils=2.44=hf1166c9_0
-  - binutils_impl_linux-aarch64=2.44=h4c662bb_0
-  - binutils_linux-aarch64=2.44=hf1166c9_0
+  - binutils=2.44=hf1166c9_1
+  - binutils_impl_linux-aarch64=2.44=h4c662bb_1
+  - binutils_linux-aarch64=2.44=hf1166c9_1
   - blas=2.132=openblas
   - blas-devel=3.9.0=32_h9678261_openblas
   - bleach=6.2.0=pyh29332c3_4
@@ -35,21 +36,24 @@ dependencies:
   - brotli=1.1.0=h86ecc28_3
   - brotli-bin=1.1.0=h86ecc28_3
   - brotli-python=1.1.0=py311h89d996e_3
+  - bwidget=1.10.1=h8af1aa0_1
   - bzip2=1.0.8=h68df207_7
-  - c-compiler=1.10.0=h6561dab_0
-  - ca-certificates=2025.6.15=hbd8a1cb_0
+  - c-ares=1.34.5=h86ecc28_0
+  - c-compiler=1.11.0=hdceaead_0
+  - ca-certificates=2025.7.14=hbd8a1cb_0
   - cachecontrol=0.14.3=pyha770c72_0
   - cachecontrol-with-filecache=0.14.3=pyhd8ed1ab_0
   - cairo=1.18.4=h83712da_0
   - cddlib=1!0.94m=h719063d_0
-  - certifi=2025.6.15=pyhd8ed1ab_0
+  - certifi=2025.7.14=pyhd8ed1ab_0
   - cffi=1.17.1=py311h14e8bb7_0
   - charset-normalizer=3.4.2=pyhd8ed1ab_0
   - click=8.2.1=pyh707e725_0
   - click-default-group=1.2.4=pyhd8ed1ab_1
   - cliquer=1.22=h31becfc_1
   - colorama=0.4.6=pyhd8ed1ab_1
   - comm=0.2.2=pyhd8ed1ab_1
+  - conda-gcc-specs=14.3.0=h92dcf8a_3
   - conda-lock=3.0.4=pyh367d9c9_1
   - conda-souschef=2.2.3=pyhd8ed1ab_0
   - contourpy=1.3.2=py311hc07b1fb_0
@@ -58,18 +62,19 @@ dependencies:
   - cpython=3.11.13=py311hd8ed1ab_0
   - crashtest=0.4.1=pyhd8ed1ab_1
   - cryptography=45.0.5=py311h4047cc9_0
-  - cxx-compiler=1.10.0=heb6c788_0
+  - curl=8.14.1=h6702fde_0
+  - cxx-compiler=1.11.0=h7b35c40_0
   - cycler=0.12.1=pyhd8ed1ab_1
   - cypari2=2.2.2=py311hc8fbf20_0
   - cyrus-sasl=2.1.28=h6c5dea3_0
   - cysignals=1.12.3=py311h89d996e_0
   - cython=3.1.2=py311hc8540bd_2
-  - dbus=1.16.2=heda779d_0
-  - debugpy=1.8.14=py311h89d996e_0
+  - dbus=1.13.6=h12b9eeb_3
+  - debugpy=1.8.15=py311h8e4e6a5_0
   - decorator=5.2.1=pyhd8ed1ab_0
   - defusedxml=0.7.1=pyhd8ed1ab_0
   - deprecated=1.2.18=pyhd8ed1ab_0
-  - distlib=0.3.9=pyhd8ed1ab_1
+  - distlib=0.4.0=pyhd8ed1ab_0
   - docutils=0.21.2=pyhd8ed1ab_1
   - double-conversion=3.3.1=h5ad3122_0
   - dulwich=0.22.8=py311h0ca61a2_0
@@ -80,7 +85,7 @@ dependencies:
   - exceptiongroup=1.3.0=pyhd8ed1ab_0
   - execnet=2.1.1=pyhd8ed1ab_1
   - executing=2.2.0=pyhd8ed1ab_0
-  - expat=2.7.0=h5ad3122_0
+  - expat=2.7.1=hfae3067_0
   - fflas-ffpack=2.5.0=h503e619_0
   - filelock=3.18.0=pyhd8ed1ab_0
   - flake8=7.3.0=pyhd8ed1ab_0
@@ -92,22 +97,23 @@ dependencies:
   - fontconfig=2.15.0=h8dda3cd_1
   - fonts-conda-ecosystem=1=0
   - fonts-conda-forge=1=0
-  - fonttools=4.58.5=py311h58d527c_0
-  - fortran-compiler=1.10.0=h25a59a9_0
+  - fonttools=4.59.0=py311h164a683_0
+  - fortran-compiler=1.11.0=h151373c_0
   - fplll=5.5.0=h45c7457_0
   - fpylll=0.6.3=py311h2dc1a0e_0
   - freetype=2.13.3=h8af1aa0_1
+  - fribidi=1.0.10=hb9de7d4_0
   - furo=2024.8.6=pyhd8ed1ab_2
   - gap-core=4.14.0=h1754e88_5
   - gap-defaults=4.14.0=h8af1aa0_5
-  - gcc=13.3.0=h8a56e6e_2
-  - gcc_impl_linux-aarch64=13.3.0=h80a1502_2
-  - gcc_linux-aarch64=13.3.0=h1cd514b_11
+  - gcc=14.3.0=ha28f942_3
+  - gcc_impl_linux-aarch64=14.3.0=h2b96704_3
+  - gcc_linux-aarch64=14.3.0=h39d9346_11
   - gf2x=1.3.0=h9af5f66_3
   - gfan=0.6.2=h5f589ec_1003
-  - gfortran=13.3.0=h8a56e6e_2
-  - gfortran_impl_linux-aarch64=13.3.0=h9c0531c_2
-  - gfortran_linux-aarch64=13.3.0=h2809cf8_11
+  - gfortran=14.3.0=ha28f942_3
+  - gfortran_impl_linux-aarch64=14.3.0=h8827d62_3
+  - gfortran_linux-aarch64=14.3.0=hc530033_11
   - gitdb=4.0.12=pyhd8ed1ab_0
   - gitpython=3.1.44=pyhff2d567_0
   - givaro=4.2.0=hd67695c_2
@@ -117,9 +123,9 @@ dependencies:
   - graphite2=1.3.14=h5ad3122_0
   - grayskull=2.9.1=pyhd8ed1ab_0
   - gsl=2.8=hac7f374_1
-  - gxx=13.3.0=h8a56e6e_2
-  - gxx_impl_linux-aarch64=13.3.0=h7eae8fb_2
-  - gxx_linux-aarch64=13.3.0=h2864abd_11
+  - gxx=14.3.0=ha28f942_3
+  - gxx_impl_linux-aarch64=14.3.0=h72695c8_3
+  - gxx_linux-aarch64=14.3.0=h83defb1_11
   - h2=4.2.0=pyhd8ed1ab_0
   - harfbuzz=11.2.1=h405b6a2_0
   - hpack=4.1.0=pyhd8ed1ab_0
@@ -138,25 +144,25 @@ dependencies:
   - ipywidgets=8.1.7=pyhd8ed1ab_0
   - jaraco.classes=3.4.0=pyhd8ed1ab_2
   - jaraco.context=6.0.1=pyhd8ed1ab_0
-  - jaraco.functools=4.1.0=pyhd8ed1ab_0
+  - jaraco.functools=4.2.1=pyhd8ed1ab_0
   - jedi=0.19.2=pyhd8ed1ab_1
   - jeepney=0.9.0=pyhd8ed1ab_0
   - jinja2=3.1.6=pyhd8ed1ab_0
-  - jsonschema=4.24.0=pyhd8ed1ab_0
+  - jsonschema=4.25.0=pyhe01879c_0
   - jsonschema-specifications=2025.4.1=pyh29332c3_0
   - jupyter-sphinx=0.5.3=pyha770c72_5
   - jupyter_client=8.6.3=pyhd8ed1ab_1
   - jupyter_core=5.8.1=pyh31011fe_0
   - jupyterlab_pygments=0.3.0=pyhd8ed1ab_2
   - jupyterlab_widgets=3.0.15=pyhd8ed1ab_0
-  - kernel-headers_linux-aarch64=4.18.0=h05a177a_18
+  - kernel-headers_linux-aarch64=4.18.0=h05a177a_8
   - keyring=25.6.0=pyha804496_0
   - keyutils=1.6.1=h4e544f5_0
   - kiwisolver=1.4.8=py311h75754e6_1
   - krb5=1.21.3=h50a48e9_0
   - lcalc=2.1.0=h30a6b3d_1
   - lcms2=2.17=hc88f144_0
-  - ld_impl_linux-aarch64=2.44=h5e2c951_0
+  - ld_impl_linux-aarch64=2.44=h5e2c951_1
   - lerc=4.0.0=hfdc4d58_1
   - libblas=3.9.0=32_h1a9f1db_openblas
   - libboost=1.85.0=h9fa81b4_4
@@ -168,27 +174,29 @@ dependencies:
   - libbrotlidec=1.1.0=h86ecc28_3
   - libbrotlienc=1.1.0=h86ecc28_3
   - libcblas=3.9.0=32_hab92f65_openblas
-  - libclang-cpp20.1=20.1.7=default_h7d4303a_0
-  - libclang13=20.1.7=default_h9e36cb9_0
+  - libclang-cpp20.1=20.1.8=default_hf07bfb7_0
+  - libclang13=20.1.8=default_h173080d_0
   - libcups=2.3.3=h5cdc715_5
+  - libcurl=8.14.1=h6702fde_0
   - libdeflate=1.24=he377734_0
   - libdrm=2.4.125=h86ecc28_0
   - libedit=3.1.20250104=pl5321h976ea20_0
   - libegl=1.7.0=hd24410f_2
-  - libexpat=2.7.0=h5ad3122_0
+  - libev=4.33=h31becfc_2
+  - libexpat=2.7.1=hfae3067_0
   - libffi=3.4.6=he21f813_1
   - libflint=3.2.2=hd878b8d_0
   - libfreetype=2.13.3=h8af1aa0_1
   - libfreetype6=2.13.3=he93130f_1
   - libgcc=15.1.0=he277a41_3
-  - libgcc-devel_linux-aarch64=13.3.0=h0c07274_102
+  - libgcc-devel_linux-aarch64=14.3.0=h370b906_103
   - libgcc-ng=15.1.0=he9431aa_3
   - libgd=2.3.3=hc8d7b1d_11
   - libgfortran=15.1.0=he9431aa_3
   - libgfortran-ng=15.1.0=he9431aa_3
   - libgfortran5=15.1.0=hbc25352_3
   - libgl=1.7.0=hd24410f_2
-  - libglib=2.84.2=hc022ef1_0
+  - libglib=2.84.1=hc486b8e_0
   - libglvnd=1.7.0=hd24410f_2
   - libglx=1.7.0=hd24410f_2
   - libgomp=15.1.0=he277a41_3
@@ -197,36 +205,39 @@ dependencies:
   - libjpeg-turbo=3.1.0=h86ecc28_0
   - liblapack=3.9.0=32_h411afd4_openblas
   - liblapacke=3.9.0=32_hc659ca5_openblas
-  - libllvm20=20.1.7=h07bd352_0
+  - libllvm20=20.1.8=h2b567e5_0
   - liblzma=5.8.1=h86ecc28_2
   - liblzma-devel=5.8.1=h86ecc28_2
+  - libnghttp2=1.64.0=hc8609a4_0
   - libnsl=2.0.1=h86ecc28_1
   - libntlm=1.4=hf897c2e_1002
   - libopenblas=0.3.30=pthreads_h9d3fd7e_0
   - libopengl=1.7.0=hd24410f_2
   - libpciaccess=0.18=h86ecc28_0
   - libpng=1.6.50=hec79eb8_0
   - libpq=17.5=hf590da8_0
-  - libsanitizer=13.3.0=ha58e236_2
+  - libsanitizer=14.3.0=h48d3638_3
   - libsodium=1.0.20=h68df207_0
-  - libsqlite=3.50.2=he2a92bd_0
+  - libsqlite=3.50.3=h022381a_1
+  - libssh2=1.11.1=h18c354c_0
   - libstdcxx=15.1.0=h3f4de04_3
-  - libstdcxx-devel_linux-aarch64=13.3.0=h0c07274_102
+  - libstdcxx-devel_linux-aarch64=14.3.0=h370b906_103
   - libstdcxx-ng=15.1.0=hf1166c9_3
   - libtiff=4.7.0=h7c15681_5
   - libuuid=2.38.1=hb4cce97_0
-  - libwebp-base=1.5.0=h0886dbf_0
+  - libwebp-base=1.6.0=ha2e29f5_0
   - libxcb=1.17.0=h262b8f6_0
   - libxcrypt=4.4.36=h31becfc_1
   - libxkbcommon=1.10.0=hbab7b08_0
   - libxml2=2.13.8=he060846_0
-  - libxslt=1.1.39=h1cc9640_0
+  - libxslt=1.1.43=h4552c8e_0
   - libzlib=1.3.1=h86ecc28_2
   - linbox=1.7.0=h8d1c19e_2
   - lrcalc=2.1=h5ad3122_7
   - m4=1.4.20=h86ecc28_0
   - m4ri=20140914=hedfd65a_1006
   - m4rie=20200125=hedfd65a_0
+  - make=4.4.1=h2a6d0cb_2
   - markupsafe=3.0.2=py311ha09ea12_1
   - matplotlib=3.10.3=py311hfecb2dc_0
   - matplotlib-base=3.10.3=py311h0385ec1_0
@@ -253,9 +264,9 @@ dependencies:
   - ncurses=6.5=ha32ae93_3
   - nest-asyncio=1.6.0=pyhd8ed1ab_1
   - networkx=3.5=pyhe01879c_0
-  - ninja=1.13.0=ha6136e2_0
+  - ninja=1.13.1=hdc560ac_0
   - ntl=11.4.3=h0d7519b_1
-  - numpy=2.3.1=py311h295a533_0
+  - numpy=2.3.1=py311h669026d_1
   - openblas=0.3.30=pthreads_h3a8cbd8_0
   - openjpeg=2.5.3=h3f56577_0
   - openldap=2.6.10=h30c48ee_0
@@ -264,23 +275,23 @@ dependencies:
   - palp=2.20=hb9de7d4_0
   - pandoc=3.7.0.2=h8af1aa0_0
   - pandocfilters=1.5.0=pyhd8ed1ab_0
+  - pango=1.56.3=h1e6a6fd_1
   - pari=2.17.2=h45cace7_4_pthread
   - pari-elldata=0.0.20161017=0
   - pari-galdata=0.0.20180411=0
   - pari-seadata=0.0.20090618=0
   - pari-seadata-small=0.0.20090618=0
   - parso=0.8.4=pyhd8ed1ab_1
-  - pcre2=10.45=hf4ec17f_0
+  - pcre2=10.44=hf4ec17f_2
   - perl=5.32.1=7_h31becfc_perl5
   - pexpect=4.9.0=pyhd8ed1ab_1
   - pickleshare=0.7.5=pyhd8ed1ab_1004
   - pillow=11.3.0=py311ha4eaa5e_0
   - pip=25.1.1=pyh8b19718_0
-  - pixman=0.46.2=h86a87f0_0
+  - pixman=0.46.4=h3945e86_0
   - pkg-config=0.29.2=hce167ba_1009
   - pkgconfig=1.5.5=pyhd8ed1ab_5
   - pkginfo=1.12.1.2=pyhd8ed1ab_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_2
   - planarity=3.0.2.0=h31becfc_0
   - platformdirs=4.3.8=pyhe01879c_0
   - pluggy=1.6.0=pyhd8ed1ab_0
@@ -308,7 +319,7 @@ dependencies:
   - pyparsing=3.2.3=pyhd8ed1ab_1
   - pyproject-metadata=0.9.1=pyhd8ed1ab_0
   - pyproject_hooks=1.2.0=pyhd8ed1ab_1
-  - pyside6=6.9.1=py311hf23f494_0
+  - pyside6=6.9.0=py311habb2604_0
   - pysocks=1.7.1=pyha55dd90_7
   - pytest=8.4.1=pyhd8ed1ab_0
   - pytest-xdist=3.8.0=pyhd8ed1ab_0
@@ -320,13 +331,15 @@ dependencies:
   - python-lrcalc=2.1=py311h89d996e_7
   - python-symengine=0.14.0=py311h8d73ece_1
   - python-utils=3.9.1=pyhff2d567_1
-  - python_abi=3.11=7_cp311
+  - python_abi=3.11=8_cp311
   - pytz=2025.2=pyhd8ed1ab_0
   - pyyaml=6.0.2=py311h58d527c_2
   - pyzmq=27.0.0=py311h826da9f_0
   - qd=2.3.22=h05efe27_1004
   - qhull=2020.2=h70be974_5
-  - qt6-main=6.9.1=h13135bf_1
+  - qt6-main=6.9.0=hf89e03d_2
+  - r-base=4.2.3=h6952844_18
+  - r-lattice=0.22_6=r42h25e906a_0
   - rapidfuzz=3.13.0=py311h89d996e_0
   - readline=8.2=h8382b9d_2
   - referencing=0.36.2=pyh29332c3_0
@@ -335,22 +348,25 @@ dependencies:
   - restructuredtext_lint=1.4.0=pyhd8ed1ab_1
   - roman-numerals-py=3.1.0=pyhd8ed1ab_0
   - rpds-py=0.26.0=py311h38c8ada_0
+  - rpy2=3.5.11=py311r42hf13da56_3
   - ruamel.yaml=0.18.14=py311ha879c10_0
   - ruamel.yaml.clib=0.2.8=py311ha879c10_1
   - ruamel.yaml.jinja2=0.2.7=pyhd8ed1ab_1
-  - ruff=0.12.2=h4384887_0
+  - ruff=0.12.4=ha8c5b7e_0
   - rw=0.9=h31becfc_2
   - sagemath-db-elliptic-curves=0.8.1=hecc5488_0
   - sagemath-db-graphs=20210214=hd8ed1ab_0
   - sagemath-db-polytopes=20170220=1
   - scipy=1.16.0=py311h1617075_0
   - secretstorage=3.3.3=py311hfecb2dc_3
+  - sed=4.9=hd4cd8d4_0
   - semver=3.0.4=pyhd8ed1ab_0
   - setuptools=80.9.0=pyhff2d567_0
   - shellingham=1.5.4=pyhd8ed1ab_1
+  - simplegeneric=0.8.1=pyhd8ed1ab_2
   - singular=4.4.1=hfdb71ee_1
   - sirocco=2.1.0=h7fa4f89_1
-  - six=1.17.0=pyhd8ed1ab_0
+  - six=1.17.0=pyhe01879c_1
   - smmap=5.0.2=pyhd8ed1ab_0
   - snowballstemmer=3.0.1=pyhd8ed1ab_0
   - soupsieve=2.7=pyhd8ed1ab_0
@@ -364,17 +380,18 @@ dependencies:
   - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_1
   - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_1
   - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_1
-  - sqlite=3.50.2=h1b15455_0
+  - sqlite=3.50.3=he8854b5_1
   - stack_data=0.6.3=pyhd8ed1ab_1
   - stdlib-list=0.11.1=pyhd8ed1ab_0
   - symengine=0.14.0=h7a35ef0_1
   - symmetrica=3.0.1=hd600fc2_0
   - sympow=2.023.6=h4d450c3_4
   - sympy=1.14.0=pyh2585a3b_105
-  - sysroot_linux-aarch64=2.17=h68829e0_18
+  - sysroot_linux-aarch64=2.28=h585391f_8
   - tachyon=0.99b6=ha0bfc61_1002
   - tinycss2=1.4.0=pyhd8ed1ab_0
   - tk=8.6.13=noxft_h5688188_102
+  - tktable=2.10=h89546af_7
   - toml=0.10.2=pyhd8ed1ab_1
   - tomli=2.2.1=pyhd8ed1ab_1
   - tomli-w=1.2.0=pyhd8ed1ab_0
@@ -387,10 +404,11 @@ dependencies:
   - typing-inspection=0.4.1=pyhd8ed1ab_0
   - typing_extensions=4.14.1=pyhe01879c_0
   - tzdata=2025b=h78e105d_0
+  - tzlocal=5.3=py311hec3470c_0
   - unicodedata2=16.0.0=py311ha879c10_0
   - urllib3=2.5.0=pyhd8ed1ab_0
-  - uv=0.7.19=h607dc9b_0
-  - virtualenv=20.31.2=pyhd8ed1ab_0
+  - uv=0.8.2=hc9499e0_0
+  - virtualenv=20.32.0=pyhd8ed1ab_0
   - wayland=1.24.0=h698ed42_0
   - wcwidth=0.2.13=pyhd8ed1ab_1
   - webencodings=0.5.1=pyhd8ed1ab_3
@@ -417,6 +435,7 @@ dependencies:
   - xorg-libxi=1.8.2=h57736b2_0
   - xorg-libxrandr=1.5.4=h86ecc28_0
   - xorg-libxrender=0.9.12=h86ecc28_0
+  - xorg-libxt=1.3.1=h57736b2_0
   - xorg-libxtst=1.2.5=h57736b2_3
   - xorg-libxxf86vm=1.1.6=h86ecc28_0
   - xz=5.8.1=h2dbfc1b_2