|
1 | | -This is a resubmission fixing two minor issues. |
| 1 | +This is a patch release to fix the new R-devel warning. |
2 | 2 |
|
3 | 3 | --- |
4 | 4 |
|
5 | 5 | ## Test environments |
6 | | -* OS X, R 3.3.1 |
7 | | -* Ubuntu 14.04, R 3.3.1 |
| 6 | +* OS X, R 3.3.2 |
| 7 | +* Ubuntu 14.04, R 3.3.2 |
8 | 8 | * win-builder (devel and release) |
9 | 9 |
|
10 | 10 | ## R CMD check results |
11 | 11 |
|
12 | | -There were no ERRORs or WARNINGs. I see two NOTEs: |
13 | | - |
14 | | -* Found the following (possibly) invalid URLs: |
15 | | - URL: http://fueleconomy.gov |
16 | | - From: man/mpg.Rd |
17 | | - Status: 404 Message: Not Found |
18 | | - |
19 | | - I think the problem is a poorly configured webserver: |
20 | | - `curl http://fueleconomy.gov` works, but `curl -I http://fueleconomy.gov` |
21 | | - (which sends a HEAD request) does not. |
22 | | - |
23 | | -* checking DESCRIPTION meta-information ... NOTE |
24 | | - Authors@R field gives persons with non-standard roles: |
25 | | - RStudio [cph, fnd]: fnd |
26 | | - |
27 | | - I would rely like to capture the signficant funders in the authors list |
28 | | - so that can be correctly acknowledged. |
| 12 | +There were no ERRORs, WARNING or NOTEs |
29 | 13 |
|
30 | 14 | ## Reverse dependencies |
31 | 15 |
|
32 | | -* I ran `R CMD check` on 954 all reverse dependencies |
33 | | - (summary at https://github.com/hadley/ggplot2/blob/master/revdep/). |
34 | | - |
35 | | -* Maintainers with NOTEs, WARNINGs, or ERRORS were notified on Oct 6, |
36 | | - Oct 25, and again today. |
37 | | - |
38 | | -* There are a lot of WARNINGS/ERRORs, but I've carefully reviewed them |
39 | | - all and as far as I can tell they are either deliberate changes to |
40 | | - the ggplot2 API, or unrelated problems. I'm sorry there are so many - |
41 | | - I don't know how to better encourage package authors to submit |
42 | | - updates. Every maintainer has been personally emailed at least twice |
43 | | - before today. |
44 | | - |
45 | | -### ggproto mistake |
46 | | - |
47 | | -I unfortunately made an implementation error in ggproto (the OO system that ggplot2 uses) that inadvertently introduced a build-time dependency on ggplot2. I've fixed the problem and added a clear error message, but to fix a number of downstream failures will require a rebuild of the following packages against the new version of ggplot2: |
48 | | - |
49 | | -* ggrepel (GeomTextRepel) |
50 | | -* ggmap (GeomRasterAnn) |
51 | | -* ggpmisc (statpeaks) |
52 | | -* ggbeeswarm (PositionQuasirandom) |
53 | | - |
54 | | -This problem affects the following downstream packgaes: |
55 | | - |
56 | | -* archivist: checking examples ... ERROR |
57 | | -* clustrd: checking examples ... ERROR |
58 | | -* clifro: checking re-building of vignette outputs ... WARNING |
59 | | -* corrr: checking examples ... ERROR |
60 | | -* factoextra: checking examples ... ERROR |
61 | | -* ggnetwork: checking examples ... ERROR |
62 | | -* ggpmisc: checking examples ... ERROR |
63 | | -* ggpubr: checking examples ... ERROR |
64 | | -* idm: checking examples ... ERROR |
65 | | -* OutbreakTools: checking examples ... ERROR |
66 | | -* photobiologyInOut: checking re-building of vignette outputs ... WARNING |
67 | | -* photobiologyLamps: checking re-building of vignette outputs ... WARNING |
68 | | -* photobiologyLEDs: checking re-building of vignette outputs ... WARNING |
69 | | -* photobiologyPlants: checking re-building of vignette outputs ... WARNING |
70 | | -* SensusR: checking examples ... ERROR |
71 | | -* sjPlot: checking examples ... ERROR |
72 | | -* soc.ca: checking examples ... ERROR |
73 | | -* trackeR: checking re-building of vignette outputs ... WARNING |
74 | | -* vipor: checking re-building of vignette outputs ... WARNING |
75 | | - |
76 | | -### ggplot2 changes |
77 | | - |
78 | | -Need dev version of plotly: the maintainer is planning on submitting ASAP: |
79 | | - |
80 | | -* eechidna: checking examples ... ERROR |
81 | | -* heatmaply: checking examples ... ERROR |
82 | | -* MendelianRandomization: checking examples ... ERROR |
83 | | -* plotly: checking examples ... ERROR |
84 | | - |
85 | | -Errors that were silent, but now break thanks to stricter checks: |
86 | | - |
87 | | -* biogram: checking re-building of vignette outputs ... WARNING |
88 | | -* BlandAltmanLeh: checking re-building of vignette outputs ... WARNING |
89 | | -* brms: checking tests ... ERROR |
90 | | -* CopulaDTA: checking re-building of vignette outputs ... WARNING |
91 | | -* ddpcr: checking re-building of vignette outputs ... WARNING |
92 | | -* fheatmap: checking examples ... ERROR |
93 | | -* gapfill: checking examples ... ERROR |
94 | | -* ggExtra: checking examples ... ERROR |
95 | | -* iNEXT: checking re-building of vignette outputs ... WARNING |
96 | | -* largeVis: checking re-building of vignette outputs ... WARNING |
97 | | -* MEGENA: checking re-building of vignette outputs ... WARNING |
98 | | -* obAnalytics: checking examples ... ERROR |
99 | | -* oddsratio: checking examples ... ERROR |
100 | | -* onlineCPD: checking examples ... ERROR |
101 | | -* PGRdup: checking re-building of vignette outputs ... WARNING |
102 | | -* quickpsy: checking examples ... ERROR |
103 | | -* sparkTable: checking examples ... ERROR |
104 | | -* surveillance: checking re-building of vignette outputs ... WARNING |
105 | | -* survMisc: checking examples ... ERROR |
106 | | -* UpSetR: checking re-building of vignette outputs ... WARNING |
107 | | - |
108 | | -Some packages rely on internal object definitions, and haven't yet been updated for this version: |
109 | | - |
110 | | -* geomnet: checking examples ... ERROR |
111 | | -* GGally: checking examples ... ERROR |
112 | | -* ggalt: checking examples ... ERROR |
113 | | -* hyperSpec: checking examples ... ERROR |
114 | | -* manhattanly: checking re-building of vignette outputs ... WARNING |
115 | | -* mtconnectR: checking tests ... ERROR |
116 | | -* quanteda: checking tests ... ERROR |
117 | | -* rstanarm: checking examples ... ERROR |
118 | | -* tabplot: checking examples ... ERROR |
119 | | -* vdmR: checking examples ... ERROR |
120 | | - |
121 | | -Two use a newly deprecated argument: |
122 | | - |
123 | | -* plotluck: checking tests ... ERROR |
124 | | -* robCompositions: checking re-building of vignette outputs ... WARNING |
125 | | - |
126 | | -### Problems unrelated to ggplot2 |
127 | | - |
128 | | -Failed to installed suggested package used in examples or vignettes: |
129 | | - |
130 | | -* bcrm: checking examples ... ERROR |
131 | | -* BCEA: checking examples ... ERROR |
132 | | -* coloc: checking re-building of vignette outputs ... WARNING |
133 | | -* emojifont: checking re-building of vignette outputs ... WARNING |
134 | | -* fuzzyforest: checking examples ... ERROR |
135 | | -* glycanr: checking examples ... ERROR |
136 | | -* GenCAT: checking examples ... ERROR |
137 | | -* ie2miscdata: checking re-building of vignette outputs ... WARNING |
138 | | -* MixSIAR: checking examples ... ERROR |
139 | | -* slim: checking re-building of vignette outputs ... WARNING |
140 | | -* survminer: checking examples ... ERROR |
141 | | -* tcgsaseq: checking examples ... ERROR |
142 | | -* TELP: checking examples ... ERROR |
143 | | - |
144 | | -Dependency of Hmisc on bleeding-edge survival: |
145 | | - |
146 | | -* choroplethr: checking re-building of vignette outputs ... WARNING |
147 | | -* Greg: checking examples ... ERROR |
148 | | -* hdnom: checking examples ... ERROR |
149 | | -* pander: checking re-building of vignette outputs ... WARNING |
150 | | -* simcausal: checking re-building of vignette outputs ... WARNING |
151 | | - |
152 | | -Needs java: |
153 | | - |
154 | | -* mlr: checking examples ... ERROR |
155 | | -* prcbench: checking examples ... ERROR |
156 | | -* rfordummies: checking examples ... ERROR |
157 | | -* userfriendlyscience: checking examples ... ERROR |
158 | | - |
159 | | -Other/unknown: |
160 | | - |
161 | | -* BioPET: checking examples ... ERROR |
162 | | - Calling mean on non-numeric object |
163 | | - |
164 | | -* ecb: checking tests ... ERROR |
165 | | - Seems to be some badness in tests of remote server |
166 | | - |
167 | | -* fitbitScraper: checking re-building of vignette outputs ... WARNING |
168 | | - Looks related to RCurl |
169 | | - |
170 | | -* ggenealogy: checking re-building of vignette outputs ... WARNING |
171 | | - Looks like encoding related issues in vignette |
172 | | - |
173 | | -* ggfortify: checking tests ... ERROR |
174 | | - Don't know what's causing these failures |
175 | | - |
176 | | -* ParamHelpers: checking tests ... ERROR |
177 | | - Failing test appears unrelated to ggplot2 |
178 | | - |
179 | | -* PredictTestbench: checking re-building of vignette outputs ... WARNING |
180 | | - Missing `pred` arugment |
181 | | - |
182 | | -* xtractomatic: checking re-building of vignette outputs ... WARNING |
183 | | - Failed to open connection |
184 | | - |
185 | | -Existing R CMD check failures: |
186 | | - |
187 | | -* proportion: checking sizes of PDF files under ‘inst/doc’ ... WARNING |
188 | | -* Rz: checking dependencies in R code ... WARNING |
189 | | -* simmer: checking compiled code ... WARNING |
190 | | - |
191 | | -Failed to install dependencies for: aop, BACA, cate, clusterfly, demi, gitter, |
192 | | - gridDebug, Hmisc, HTSSIP, ibmdbR, IntClust, LANDD, LDheatmap, MetaIntegrator, |
193 | | - metaMix, multiDimBio, myTAI, NFP, PKgraph, PlasmaMutationDetector, pRF, PSCBS, |
194 | | - raptr, rms, RPPanalyzer, scmamp, SeqFeatR, snpEnrichment, specmine, starmie, |
195 | | - structSSI, TcGSA, toaster |
196 | | - |
197 | | -Failed to install: BACCT, backShift, bamdit, brainGraph, bsam, BTSPAS, |
198 | | - classify, CollapsABEL, crmPack, Crossover, Deducer, DiversityOccupancy, |
199 | | - DynNom, dynr, Fgmutils, funModeling, G2Sd, ggtern, greport, IAPWS95, |
200 | | - imageData, imager, InSilicoVA, llama, localgauss, ltbayes, magick, |
201 | | - MergeGUI, MissingDataGUI, morse, mrMLM, mwaved, npregfast, OpenStreetMap, |
202 | | - openVA, OriGen, pcaPA, pcrsim, playwith, PortfolioEffectHFT, qdap, ReporteRs, |
203 | | - RJafroc, rmcfs, rrepast, RSA, rstan, rsvg, SEERaBomb, seewave, simmr, spcosa, |
204 | | - StroupGLMM, strvalidator, subspaceMOA, UBL, UsingR, vmsbase, x.ent, XGR, |
205 | | - XLConnect |
206 | | - |
207 | | -### False positives |
208 | | - |
209 | | -These seem to be a couple of false positives: neither I nor the maintainers could reproduce outside of my revdep check setup: |
210 | | - |
211 | | -* radiant.model: checking examples ... ERROR |
212 | | -* data.table: checking tests ... ERROR |
| 16 | +I did not run R CMD check as this change should not impact any downstream code. |
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