@@ -45,19 +45,15 @@ def test_forfatal_from_string(self):
4545 dmat_est = pd .DataFrame (data = dmat , columns = coefficient_names )
4646
4747 dmat_est_loc , _ = de .utils .design_matrix (dmat = dmat_est , return_type = "dataframe" )
48- dmat_est_scale , _ = de .utils .design_matrix (dmat = dmat_est , return_type = "dataframe" )
48+ dmat_est_scale , _ = de .utils .design_matrix (dmat = pd . DataFrame ( dmat_est [ 'intercept' ]) , return_type = "dataframe" )
4949
5050 # Build constraints:
5151 constraints_loc = de .utils .constraint_matrix_from_string (
5252 dmat = dmat_est_loc .values ,
5353 coef_names = dmat_est_loc .columns ,
5454 constraints = ["bio1+bio2=0" , "bio3+bio4=0" ]
5555 )
56- constraints_scale = de .utils .constraint_matrix_from_string (
57- dmat = dmat_est_scale .values ,
58- coef_names = dmat_est_scale .columns ,
59- constraints = ["bio1+bio2=0" , "bio3+bio4=0" ]
60- )
56+ constraints_scale = None
6157
6258 test = de .test .wald (
6359 data = model .x ,
@@ -101,9 +97,9 @@ def test_forfatal_from_dict(self):
10197 gene_names = model .features ,
10298 sample_description = sample_description ,
10399 formula_loc = "~1+cond+batch" ,
104- formula_scale = "~1+cond+batch " ,
100+ formula_scale = "~1" ,
105101 constraints_loc = {"batch" : "cond" },
106- constraints_scale = { "batch" : "cond" } ,
102+ constraints_scale = None ,
107103 coef_to_test = ["cond[T.cond1]" ]
108104 )
109105 _ = test .summary ()
@@ -144,9 +140,9 @@ def test_null_distribution_wald_constrained(self, n_genes: int = 100):
144140 gene_names = model .features ,
145141 sample_description = sample_description ,
146142 formula_loc = "~1+cond+batch" ,
147- formula_scale = "~1+cond+batch " ,
143+ formula_scale = "~1" ,
148144 constraints_loc = {"batch" : "cond" },
149- constraints_scale = { "batch" : "cond" } ,
145+ constraints_scale = None ,
150146 coef_to_test = ["cond[T.cond1]" ]
151147 )
152148 _ = test .summary ()
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