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Use a larger non-zero value to fix test_single_external_libs.py
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diffxpy/unit_test/test_single_external_libs.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -28,7 +28,7 @@ def _prepare_data(self, n_cells: int = 2000, n_genes: int = 100):
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def _eval(self, test, ref_pvals):
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test_pval = test.pval
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pval_dev = np.abs(test_pval - ref_pvals)
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log_pval_dev = np.abs(np.log(test_pval+1e-200) - np.log(ref_pvals+1e-200))
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log_pval_dev = np.abs(np.log(test_pval+1e-8) - np.log(ref_pvals+1e-8))
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max_dev = np.max(pval_dev)
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max_log_dev = np.max(log_pval_dev)
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mean_dev = np.mean(log_pval_dev)

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