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Thomas Girke
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‎config.toml‎

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icon = "fa fa-envelope"
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desc = "Discuss development issues around the project"
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# Top-level navigation (horizontal)
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## About
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[[menu.main]]
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name = "About"
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weight = 1
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url = "/about/"
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[[menu.main]]
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name = "Our Team"
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name = "Project"
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url = "/about/project/"
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parent = "About"
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weight = 2
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[[menu.main]]
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name = "Team"
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url = "/about/team/"
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parent = "About"
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weight = 1
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weight = 3
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[[menu.main]]
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name = "Publications"
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url = "/about/publications/"
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parent = "About"
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weight = 2
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weight = 4
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[[menu.main]]
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name = "Acknowledgement"
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url = "/about/acknowledgement/"

‎content/en/about/_index.md‎

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---
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title: "About systemPipe"
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title: "About systemPipe Project"
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linkTitle: "About"
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type: docs
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---

‎content/en/about/acknowledgement.Rmd‎

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linkTitle: "Acknowledgement"
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type: docs
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description: >
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weight: 5
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---
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‎content/en/about/acknowledgement.md‎

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‎content/en/about/bak_index.md‎

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‎content/en/about/contact.Rmd‎

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‎content/en/about/contact.md‎

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CA 92521 <br/>
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Email: <a href="mailto:danielac@ucr.edu">thomas.girke@ucr.edu</a><br/>
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**Le Zhang**, Ph.D. <br/>
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Email: <a href="mailto:le.zhang001@email.ucr.edu">le.zhang001@email.ucr.edu</a><br/>
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**[Daniela Cassol{blk}](https://www.dcassol.com/)**, Ph.D. <br/>
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Postdoctoral Researcher <br/>
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Department of Botany and Plant Sciences ([BPSC{blk}](http://plantbiology.ucr.edu/)) <br/>
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1207E Genomics Building <br/>
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University of California, Riverside ([UCR{blk}](http://www.ucr.edu/)) <br/>
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CA 92521 <br/>
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Email: <a href="mailto:danicassol@gmail.com">danicassol@gmail.com</a><br/>

‎content/en/about/project.md‎

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---
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title: "About Project"
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linkTitle: "Project"
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type: docs
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description: >
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---
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## test
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<img src="/systemPipe_logo.png" width="20%" alt="Right Aligned" align="right" style="display: block; margin: auto;" />
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### Recommended Workflow: Fork and Pull Request Model
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This is the most common and robust method for community contributions.
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1. Create a "Template" Repository: Within your organization, create a public repository that serves as a template or a starting point for submissions. It should contain contribution guidelines (CONTRIBUTING.md), a code of conduct, license information, and potentially a project structure.
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2. Community Forks the Repository: Users interested in submitting a project will fork this "Template" repository to their personal GitHub account. This creates their own copy where they can work independently.
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3. User Development: The user develops their project within their personal fork.
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4. User Opens a Pull Request: When the user is ready to submit their project, they open a pull request from their personal repository back to the main "Template" repository in your organization. This pull request serves as the formal submission and review mechanism.
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5. Review Process: Organization members review the pull request, provide feedback, request changes, and ensure the submission meets community standards.
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6. Integration into the Organization:
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+ If the goal is to integrate their code into the template project, you merge the pull request.
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+ If the goal is for their entire repository to become a standalone repository within your organization, you would accept the submission via the pull request review process, and then work with the user offline to have them transfer ownership of their repository to the organization.

‎content/en/about/publications.Rmd‎

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title: "Publications"
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author: "Author: Daniela Cassol (danielac@ucr.edu)"
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author: "Author: Team"
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date: "Last update: `r format(Sys.time(), '%d %B, %Y')`"
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‎content/en/about/publications.md‎

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title: "Publications"
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author: "Author: Daniela Cassol (danielac@ucr.edu)"
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date: "Last update: 29 April, 2022"
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author: "Author: Team"
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date: "Last update: 02 December, 2025"
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