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lines changed Original file line number Diff line number Diff line change @@ -73,7 +73,9 @@ def mmotifs(
7373 motif. The first match is always the self/trivial-match for each motif.
7474
7575 max_motifs : int, default 1
76- The maximum number of motifs to return.
76+ The maximum number of motifs to return. To consider returning all possible
77+ valid motifs, try setting `max_motifs` to the length of your input matrix
78+ profile (i.e., `max_motifs=len(P)`
7779
7880 atol : float, default 1e-8
7981 The absolute tolerance parameter. This value will be added to ``max_distance``
Original file line number Diff line number Diff line change @@ -72,7 +72,9 @@ def _motifs(
7272 the first match is always the self-match/trivial-match for each motif.
7373
7474 max_motifs : int
75- The maximum number of motifs to return.
75+ The maximum number of motifs to return. To consider returning all possible
76+ valid motifs, try setting `max_motifs` to the length of your input matrix
77+ profile (i.e., `max_motifs=len(P)`)
7678
7779 atol : float, default 1e-8
7880 The absolute tolerance parameter. This value will be added to `max_distance`
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