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Workflow

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Detailed software versions can be found under Rules.

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Results

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FileSizeDescription
- ENST00000471909.bootstrap.svg - 65.9 kB

Distribution of estimated expression of ENST00000471909 over all bootstrap runs.

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- ENST00000474114.bootstrap.svg - 61.8 kB

Distribution of estimated expression of ENST00000474114 over all bootstrap runs.

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- ENST00000613488.bootstrap.svg - 68.7 kB

Distribution of estimated expression of ENST00000613488 over all bootstrap runs.

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- by-condition.diffexp.tsv - 10.1 kB

Differentially expressed transcripts using the model ~condition.

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- condition.pca.svg - 36.9 kB

Principal component analysis colored by condition.

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Statistics

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- If the workflow has been executed in cluster/cloud, runtimes include the waiting time in the queue. -
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Rules

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RuleJobsOutputSingularityConda environment
sleuth_diffexp1 - -
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  • tables/diffexp/by-condition.diffexp.tsv
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  • r-sleuth =0.30
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  • bioconductor-rhdf5lib =1.4
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  • bioconductor-rhdf5 =2.26.2
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  • bioconductor-biomart =2.36
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plot_pca1 - -
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  • plots/pca/condition.pca.svg
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  • r-sleuth =0.30
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  • bioconductor-rhdf5lib =1.4
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  • bioconductor-rhdf5 =2.26.2
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  • bioconductor-biomart =2.36
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plot_bootstrap3 - -
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  • plots/bootstrap/ENST00000471909.bootstrap.svg
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  • plots/bootstrap/ENST00000613488.bootstrap.svg
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  • plots/bootstrap/ENST00000474114.bootstrap.svg
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  • r-sleuth =0.30
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  • bioconductor-rhdf5lib =1.4
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  • bioconductor-rhdf5 =2.26.2
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  • bioconductor-biomart =2.36
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sleuth_init1 - -
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  • sleuth/all.rds
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  • r-sleuth =0.30
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  • bioconductor-rhdf5lib =1.4
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  • bioconductor-rhdf5 =2.26.2
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  • bioconductor-biomart =2.36
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kallisto_quant3 - -
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  • kallisto/B-1
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  • kallisto/B-2
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  • kallisto =0.45
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  • hdf5 =1.10
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compose_sample_sheet1 - -
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  • sleuth/samples.tsv
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cutadapt_pe2 - -
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  • cutadapt ==1.13
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kallisto_index1 - -
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  • kallisto/transcripts.idx
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  • kallisto =0.45
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  • hdf5 =1.10
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cutadapt1 - -
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  • trimmed/B-2.fastq.gz
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  • trimmed/B-2.qc.txt
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