Fix & update CI (#243)

Author: nim65s

.github/workflows/ci.yml

@@ -18,7 +18,7 @@ jobs:
             -   name: Setup Python
                 uses: actions/setup-python@v5
                 with:
-                    python-version: '3.11'
+                    python-version: '3.13'
             -   name: Checkout
                 uses: actions/checkout@v4
             -   name: Install requirements
@@ -46,12 +46,12 @@ jobs:
                 pybind11-branch:
                     - "master"
                 python:
+                    - "3.13"
                     - "3.12"
                     - "3.11"
                     - "3.10"
                     - "3.9"
                     - "3.8"
-                    - "3.7"
                 numpy-format:
                     - "numpy-array-wrap-with-annotated"
                 include:
@@ -87,7 +87,7 @@ jobs:
 
             -   name: Install demo module
                 shell: bash
-                run: ./tests/install-demo-module.sh --pybind11-branch "${{ matrix.pybind11-branch }}" --eigen-branch "master"
+                run: ./tests/install-demo-module.sh --pybind11-branch "${{ matrix.pybind11-branch }}"
 
             -   name: Check stubs generation
                 shell: bash
@@ -114,11 +114,12 @@ jobs:
             matrix:
                 test-package: [ "gemmi" ]
                 python:
+                    - "3.13"
+                    - "3.12"
                     - "3.11"
                     - "3.10"
                     - "3.9"
                     - "3.8"
-                    - "3.7"
         steps:
             -   uses: actions/checkout@v4
 
@@ -159,7 +160,7 @@ jobs:
             -   name: Setup Python ${{ matrix.python }}
                 uses: actions/setup-python@v2
                 with:
-                    python-version: "3.10"
+                    python-version: "3.13"
 
             -   name: Build dist
                 run: pipx run build --sdist --wheel

pybind11_stubgen/parser/mixins/filter.py

@@ -40,11 +40,13 @@ class FilterClassMembers(IParser):
                 "__builtins__",
                 "__cached__",
                 "__file__",
+                "__firstlineno__",
                 "__loader__",
                 "__name__",
                 "__package__",
                 "__path__",
                 "__spec__",
+                "__static_attributes__",
             ),
         )
     }
@@ -104,6 +106,8 @@ def handle_class_member(
             return None
         if name.startswith("__pybind11_module"):
             return None
+        if name.startswith("_pybind11_conduit_v1_"):
+            return None
         return super().handle_class_member(path, class_, member)
 
 

tests/install-demo-module.sh

@@ -15,20 +15,17 @@ function parse_args() {
     fi
     echo "Usage: $0 --pybind11-branch PYBIND11_BRANCH"
     echo "  --pybind11-branch     name of pybind11 branch"
-    echo "  --eigen-branch        name of eigen branch"
     exit 1
   }
 
   # parse params
   while [[ "$#" > 0 ]]; do case $1 in
     --pybind11-branch) PYBIND11_BRANCH="$2"; shift;shift;;
-    --eigen-branch) EIGEN_BRANCH="$2"; shift;shift;;
     *) usage "Unknown parameter passed: $1"; shift; shift;;
   esac; done
 
   # verify params
   if [ -z "$PYBIND11_BRANCH" ]; then usage "PYBIND11_BRANCH is not set"; fi;
-  if [ -z "$EIGEN_BRANCH" ]; then usage "EIGEN_BRANCH is not set"; fi;
 
   TESTS_ROOT="$(readlink -m "$(dirname "$0")")"
   PROJECT_ROOT="${TESTS_ROOT}/.."
@@ -39,18 +36,6 @@ function parse_args() {
 }
 
 
-clone_eigen() {
-  mkdir -p "${EXTERNAL_DIR}"
-  if [ ! -d "${EXTERNAL_DIR}/eigen" ]; then
-    git clone \
-        --depth 1 \
-        --branch "${EIGEN_BRANCH}" \
-        --single-branch \
-        https://gitlab.com/libeigen/eigen.git \
-        "${EXTERNAL_DIR}/eigen"
-  fi
-}
-
 clone_pybind11() {
   mkdir -p "${EXTERNAL_DIR}"
   if [ ! -d "${EXTERNAL_DIR}/pybind11" ]; then
@@ -63,13 +48,8 @@ clone_pybind11() {
   fi
 }
 
-install_eigen() {
-  cmake -S "${EXTERNAL_DIR}/eigen" -B "${BUILD_ROOT}/eigen"
-  cmake --install "${BUILD_ROOT}/eigen" \
-        --prefix "${INSTALL_PREFIX}"
-}
-
 install_pybind11() {
+  export CMAKE_PREFIX_PATH="$(cmeel cmake)"
   cmake \
         -S "${EXTERNAL_DIR}/pybind11" \
         -B "${BUILD_ROOT}/pybind11"\
@@ -87,18 +67,16 @@ install_demo() {
 
 install_pydemo() {
   (
-    export CMAKE_PREFIX_PATH="$(readlink -m "${INSTALL_PREFIX}")";
+    export CMAKE_PREFIX_PATH="$(readlink -m "${INSTALL_PREFIX}"):$(cmeel cmake)";
     export CMAKE_ARGS="-DCMAKE_CXX_STANDARD=17";
     pip install --force-reinstall "${TESTS_ROOT}/py-demo"
   )
 }
 
 main () {
   parse_args "$@"
-  clone_eigen
   clone_pybind11
   install_pybind11
-  install_eigen
   install_demo
   install_pydemo
 }

tests/stubs/python-3.12/requirements.txt

@@ -1,4 +1,5 @@
 black==22.8.0
+cmeel-eigen==3.4.0.2
 isort==5.10.1
 numpy~=1.20
 scipy~=1.0

tests/stubs/python-3.13

@@ -0,0 +1 @@
+python-3.12

tests/stubs/python-3.7/requirements.txt

@@ -1,4 +1,5 @@
 black==22.8.0
+cmeel-eigen==3.4.0.2
 isort==5.10.1
 numpy~=1.20
 scipy~=1.0

tests/stubs/python-3.8/requirements.txt

@@ -1,4 +1,5 @@
 black==22.8.0
+cmeel-eigen==3.4.0.2
 isort==5.10.1
 numpy~=1.20
 scipy~=1.0