fix bug with rendering of labels in templates (#650)

* fix bug with rendering of labels in templates

This was done last night (and the PR should have been
opened then). This will fix a bug that labels often
have newlines, which breaks the templates!

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Author: vsoch

CHANGELOG.md

@@ -14,6 +14,7 @@ and **Merged pull requests**. Critical items to know are:
 The versions coincide with releases on pip. Only major versions will be released as tags on Github.
 
 ## [0.0.x](https://github.com/singularityhub/singularity-hpc/tree/main) (0.0.x)
+ - Labels with newlines need additional parsing (0.1.23)
  - Do not write directly to output with shpc show (0.1.22)
  - Podman template bug (0.1.21)
  - Improvement to shpc help command output (0.1.2)

docs/getting_started/user-guide.rst

@@ -157,7 +157,7 @@ as environment variables, as they will be subbed in by shpc before environment
 variable replacement. A summary table of variables is included below, and then further discussed in detail.
 
 
-.. list-table:: Title
+.. list-table:: Settings
    :widths: 25 65 10
    :header-rows: 1
 
@@ -191,6 +191,9 @@ variable replacement. A summary table of variables is included below, and then f
    * - updated_at
      - a timestamp to keep track of when you last saved
      - never
+   * - label_separator
+     - When parsing labels, replace newlines with this string
+     - ', '
    * - default_version
      - Should a default version be used?
      - module_sys

shpc/main/container/base.py

@@ -102,6 +102,15 @@ def container_dir(self, name):
             return os.path.join(self.settings.module_base, name)
         return os.path.join(self.settings.container_base, name)
 
+    def clean_labels(self, labels):
+        """
+        Clean labels, meaning removing newlines and replacing with label separator
+        """
+        updated_labels = {}
+        for key, value in labels.items():
+            updated_labels[key] = value.replace("\n", self.settings.label_separator)
+        return updated_labels
+
     def guess_tag(self, module_name, allow_fail=False):
         """
         If a user asks for a name without a tag, try to figure it out.

shpc/main/container/config.py

@@ -254,6 +254,9 @@ def get_url(self):
         return self.get("docker") or self.get("gh") or self.get("path")
 
     def get(self, key, default=None):
+        """
+        Get a value from the config.
+        """
         return self.entry._config.get(key, default)
 
     def get_pull_type(self):

shpc/main/container/docker.py

@@ -207,7 +207,8 @@ def install(self, module_path, template, module, features=None):
                 "Container %s was not found. Was it pulled?" % module.container_path
             )
 
-        labels = manifest[0].get("Labels", {})
+        labels = manifest[0].get("Labels") or {}
+        labels = self.clean_labels(labels)
 
         # Option to create wrapper scripts for commands
         aliases = module.config.get_aliases()

shpc/main/container/singularity.py

@@ -191,7 +191,7 @@ def install(self, module_path, template, module, features=None):
             metadata = self.inspect(module.container_path)
 
             # Add labels, and deffile
-            labels = metadata.get("attributes", {}).get("labels")
+            labels = metadata.get("attributes", {}).get("labels") or {}
             deffile = (
                 metadata.get("attributes", {}).get("deffile", "").replace("\n", "\\n")
             )
@@ -203,6 +203,9 @@ def install(self, module_path, template, module, features=None):
         # Option to create wrapper scripts for commands
         aliases = module.config.get_aliases()
 
+        # Labels with newlines need to be handled, replace with comma
+        labels = self.clean_labels(labels)
+
         # Wrapper scripts can be global (for aliases) or container specific
         wrapper_scripts = []
         if self.settings.wrapper_scripts["enabled"] is True:

shpc/main/schemas.py

@@ -157,6 +157,7 @@
         ]
     },
     "enable_tty": {"type": "boolean"},
+    "label_separator": {"type": "string"},
     "views_base": {"type": ["string", "null"]},
     "default_view": {"type": ["string", "null"]},
     "wrapper_scripts": wrapper_scripts,

shpc/settings.yml

@@ -42,6 +42,9 @@ default_version: module_sys
 # It's recommended to do this for faster loading
 container_base: $root_dir/containers
 
+# When parsing labels, replace newlines with this string
+label_separator: ', '
+
 # Default root directory to create views
 views_base: $root_dir/views
 

shpc/version.py

@@ -2,7 +2,7 @@
 __copyright__ = "Copyright 2021-2023, Vanessa Sochat"
 __license__ = "MPL 2.0"
 
-__version__ = "0.1.22"
+__version__ = "0.1.23"
 AUTHOR = "Vanessa Sochat"
 EMAIL = "vsoch@users.noreply.github.com"
 NAME = "singularity-hpc"