From 70127756d757e3a3e8e64ae8e19d35c787389889 Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Sat, 3 May 2025 00:41:30 +1000 Subject: [PATCH 1/7] Modernise - uv, workflows, pyright, ruff --- .darglint | 3 - .flake8 | 10 - .github/PULL_REQUEST_TEMPLATE.md | 5 +- .github/dependabot.yml | 24 - .github/release-drafter.yml | 11 +- .github/workflows/ci.yml | 183 + .github/workflows/constraints.txt | 5 - .github/workflows/greetings.yml | 12 +- .github/workflows/labeler.yml | 14 +- .github/workflows/release.yml | 107 +- .github/workflows/tests.yml | 161 - .gitignore | 52 +- .pre-commit-config.yaml | 97 +- .python-version | 1 + .readthedocs.yaml | 38 +- CONTRIBUTING.md | 119 +- LICENSE | 2 +- README.md | 25 +- docs/conf.py | 3 +- docs/examples/test.ipynb | 22 +- docs/installation.rst | 5 +- docs/requirements.txt | 10 - noxfile.py | 296 -- poetry.lock | 3896 ----------------- pyproject.toml | 152 +- ruff.toml | 54 + src/planestress/__main__.py | 12 - .../finite_elements/finite_element.py | 1 - .../analysis/finite_elements/lines.py | 11 +- .../analysis/finite_elements/quad4.py | 3 +- .../analysis/finite_elements/quad8.py | 3 +- .../analysis/finite_elements/quad9.py | 3 +- .../analysis/finite_elements/tri3.py | 5 +- .../analysis/finite_elements/tri6.py | 5 +- src/planestress/analysis/plane_stress.py | 1 - src/planestress/analysis/solver.py | 5 +- src/planestress/post/plotting.py | 9 +- src/planestress/post/results.py | 6 +- src/planestress/pre/analysis_case.py | 1 - src/planestress/pre/boundary_condition.py | 7 +- src/planestress/pre/geometry.py | 5 +- src/planestress/pre/mesh.py | 40 +- tests/conftest.py | 2 +- uv.lock | 2775 ++++++++++++ 44 files changed, 3320 insertions(+), 4881 deletions(-) delete mode 100644 .darglint delete mode 100644 .flake8 delete mode 100644 .github/dependabot.yml create mode 100644 .github/workflows/ci.yml delete mode 100644 .github/workflows/constraints.txt delete mode 100644 .github/workflows/tests.yml create mode 100644 .python-version delete mode 100644 docs/requirements.txt delete mode 100644 noxfile.py delete mode 100644 poetry.lock create mode 100644 ruff.toml delete mode 100644 src/planestress/__main__.py create mode 100644 uv.lock diff --git a/.darglint b/.darglint deleted file mode 100644 index 75ab6ad..0000000 --- a/.darglint +++ /dev/null @@ -1,3 +0,0 @@ -[darglint] -strictness = full -ignore_regex=^test_(.*) diff --git a/.flake8 b/.flake8 deleted file mode 100644 index c08ff06..0000000 --- a/.flake8 +++ /dev/null @@ -1,10 +0,0 @@ -[flake8] -select = B,B9,C,D,DAR,E,F,N,PT,RST,S,W -ignore = B019,B028,B905,E203,E501,E741,RST201,RST203,RST301,RST303,W503 -max-line-length = 88 -docstring-convention = google -per-file-ignores = tests/*:S101,__init__.py:F401 -rst-roles = class,const,func,meth,mod,ref -rst-directives = deprecated -pytest-fixture-no-parentheses = True -pytest-mark-no-parentheses = True diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 961f874..aa642aa 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -7,9 +7,12 @@ tick all *appropriate* boxes. But please read our [contribution guide](https://github.com/robbievanleeuwen/plane-stress/blob/master/CONTRIBUTING.md) at least once, it will save you unnecessary review cycles! --> +- [ ] Added a description of your pull request below. - [ ] Added **tests** for changed code. - [ ] Updated **documentation** for changed code. -- [ ] Run the **Nox** test suite to check for errors and warnings. +- [ ] Run `uv run pre-commit run --all-files` and `uv run pyright` to ensure code quality. + + diff --git a/.github/dependabot.yml b/.github/dependabot.yml deleted file mode 100644 index ef1b124..0000000 --- a/.github/dependabot.yml +++ /dev/null @@ -1,24 +0,0 @@ -version: 2 - -updates: - - package-ecosystem: github-actions - directory: "/" - schedule: - interval: weekly - - - package-ecosystem: pip - directory: "/.github/workflows" - schedule: - interval: monthly - - # - package-ecosystem: pip - # directory: "/docs" - # schedule: - # interval: monthly - - # - package-ecosystem: pip - # directory: "/" - # schedule: - # interval: weekly - # allow: - # dependency-type: direct diff --git a/.github/release-drafter.yml b/.github/release-drafter.yml index 7b38f49..9819f3a 100644 --- a/.github/release-drafter.yml +++ b/.github/release-drafter.yml @@ -35,6 +35,8 @@ categories: - "build" category-template: "### $TITLE" +name-template: "v$RESOLVED_VERSION" +tag-template: "v$RESOLVED_VERSION" version-resolver: major: @@ -48,14 +50,13 @@ version-resolver: - "patch" default: patch -exclude-contributors: - - "robbievanleeuwen" - # Custom text at start of release -# header: | -# xxx +header: > + + This release... template: | + ## What's Changed $CHANGES diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000..220bf6a --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,183 @@ +name: CI + +on: + push: + branches: + - master + pull_request: + types: [opened, reopened, synchronize] + +env: + UV_VERSION: 0.6.17 + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + pre-commit: + name: pre-commit + runs-on: ubuntu-latest + + steps: + - name: Check out the repo + uses: actions/checkout@v4 + + - name: Install uv version ${{ env.UV_VERSION }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + + - name: Install python using uv + run: uv python install + + - name: Install dependencies + run: uv sync --locked --only-group lint + + - name: Run pre-commit + run: uv run pre-commit run --all-files -color always --show-diff-on-failure + + type-checking: + name: type-checking + runs-on: ubuntu-latest + + steps: + - name: Check out the repo + uses: actions/checkout@v4 + + - name: Install uv version ${{ env.UV_VERSION }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + + - name: Install python using uv + run: uv python install + + - name: Install dependencies + run: uv sync --locked --only-group lint + + - name: Run pyright + run: uv run pyright + + tests: + name: ${{ matrix.session }} ${{ matrix.python }} [${{ matrix.os }}] + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + include: + - {python: '3.13', os: ubuntu-latest, session: tests} + - {python: '3.12', os: ubuntu-latest, session: tests} + - {python: '3.11', os: ubuntu-latest, session: tests} + - {python: '3.13', os: windows-latest, session: tests} + - {python: '3.12', os: windows-latest, session: tests} + - {python: '3.11', os: windows-latest, session: tests} + - {python: '3.13', os: macos-latest, session: tests} + - {python: '3.12', os: macos-latest, session: tests} + - {python: '3.11', os: macos-latest, session: tests} + - {python: '3.13', os: macos-13, session: tests} + - {python: '3.12', os: macos-13, session: tests} + - {python: '3.11', os: macos-13, session: tests} + + steps: + - name: Check out the repo + uses: actions/checkout@v4 + + - name: Install uv version ${{ env.UV_VERSION }} and set python to version ${{ matrix.python }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} + python-version: ${{ matrix.python }} + enable-cache: true + + - name: Install python using uv + run: uv python install + + - name: Install test dependencies + run: uv sync --locked --only-group tests + + - name: Run pytest + run: uv run coverage run --parallel-mode -m pytest -m 'not benchmark_suite' + + - name: Upload coverage data + uses: actions/upload-artifact@v4 + with: + name: coverage-data-${{ matrix.session }}-${{ matrix.os }}-${{ matrix.python + }} + include-hidden-files: true + path: .coverage.* + + docs-build: + name: docs-build + runs-on: ubuntu-latest + + steps: + - name: Check out the repo + uses: actions/checkout@v4 + + - name: Install uv version ${{ env.UV_VERSION }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + + - name: Install python using uv + run: uv python install + + - name: Install dependencies + run: uv sync --locked --only-group tests + + - name: Install pandoc + uses: pandoc/actions/setup@v1 + + - name: Build docs + run: uv run sphinx-build --color docs docs/_build + + - name: Upload docs + uses: actions/upload-artifact@v4 + with: + name: docs + path: docs/_build + + coverage: + name: coverage + runs-on: ubuntu-latest + needs: tests + + steps: + - name: Check out the repo + uses: actions/checkout@v4 + + - name: Install uv version ${{ env.UV_VERSION }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + + - name: Install python using uv + run: uv python install + + - name: Install dependencies + run: uv sync --locked --only-group test + + - name: Download coverage data + uses: actions/download-artifact@v4 + with: + pattern: coverage-data-* + merge-multiple: true + + - name: Combine coverage data + run: uv run coverage combine + + - name: Display coverage report + run: uv run coverage report -i + + - name: Create coverage report + run: uv run coverage xml -i + + - name: Upload coverage report + uses: codecov/codecov-action@v5 + with: + token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/constraints.txt b/.github/workflows/constraints.txt deleted file mode 100644 index fac9555..0000000 --- a/.github/workflows/constraints.txt +++ /dev/null @@ -1,5 +0,0 @@ -pip==23.3.1 -nox==2023.4.22 -nox-poetry==1.0.3 -poetry==1.6.1 -virtualenv==20.24.6 diff --git a/.github/workflows/greetings.yml b/.github/workflows/greetings.yml index dcf3cc3..1c734ca 100644 --- a/.github/workflows/greetings.yml +++ b/.github/workflows/greetings.yml @@ -9,8 +9,10 @@ jobs: issues: write pull-requests: write steps: - - uses: actions/first-interaction@v1 - with: - repo-token: ${{ secrets.GITHUB_TOKEN }} - issue-message: "Thanks for opening your first issue in ``planestress`` :raised_hands: Pull requests are always welcome :wink:" - pr-message: "Thank you for your contribution to ``planestress`` :pray: We will be reviewing your PR shortly :monocle_face:" + - uses: actions/first-interaction@v1 + with: + repo-token: ${{ secrets.GITHUB_TOKEN }} + issue-message: 'Thanks for opening your first issue in ``planestress`` + :raised_hands: Pull requests are always welcome :wink:' + pr-message: 'Thank you for your contribution to ``planestress`` :pray: + We will be reviewing your PR shortly :monocle_face:' diff --git a/.github/workflows/labeler.yml b/.github/workflows/labeler.yml index 59d37eb..f5b3200 100644 --- a/.github/workflows/labeler.yml +++ b/.github/workflows/labeler.yml @@ -3,16 +3,16 @@ name: Labeler on: push: branches: - - master + - master jobs: labeler: runs-on: ubuntu-latest steps: - - name: Check out the repository - uses: actions/checkout@v4 + - name: Check out the repository + uses: actions/checkout@v4 - - name: Run Labeler - uses: crazy-max/ghaction-github-labeler@v5.0.0 - with: - skip-delete: true + - name: Run Labeler + uses: crazy-max/ghaction-github-labeler@v5 + with: + skip-delete: true diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 4cfdea3..f02c886 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -3,76 +3,67 @@ name: Release on: push: branches: - - master + - master + +env: + UV_VERSION: 0.6.17 jobs: release: name: Release runs-on: ubuntu-latest - steps: - - name: Check out the repository - uses: actions/checkout@v4 - with: - fetch-depth: 2 + permissions: + id-token: write + contents: write - - name: Set up Python - uses: actions/setup-python@v4 - with: - python-version: "3.11" + steps: + - name: Check out the repository + uses: actions/checkout@v4 + with: + fetch-depth: 2 - - name: Upgrade pip - run: | - pip install --constraint=.github/workflows/constraints.txt pip - pip --version + - name: Install uv version ${{ env.UV_VERSION }} + uses: astral-sh/setup-uv@v6 + with: + version: ${{ env.UV_VERSION }} - - name: Install Poetry - run: | - pip install --constraint=.github/workflows/constraints.txt poetry - poetry --version + - name: Install python using uv + run: uv python install - - name: Check if there is a parent commit - id: check-parent-commit - run: | - echo "::set-output name=sha::$(git rev-parse --verify --quiet HEAD^)" + - name: Get previous commit SHA + run: echo "sha=$(git rev-parse --verify --quiet HEAD^)" >> $GITHUB_ENV - - name: Detect and tag new version - id: check-version - if: steps.check-parent-commit.outputs.sha - uses: salsify/action-detect-and-tag-new-version@v2.0.3 - with: - version-command: | - bash -o pipefail -c "poetry version | awk '{ print \$2 }'" + - name: Detect and tag new version + id: check-version + if: ${{ env.sha }} + uses: salsify/action-detect-and-tag-new-version@v2 + with: + version-command: echo $(grep "^version =" pyproject.toml | sed 's/version + = "\(.*\)"/\1/') - - name: Bump version for developmental release - if: "! steps.check-version.outputs.tag" - run: | - poetry version patch && - version=$(poetry version | awk '{ print $2 }') && - poetry version $version.dev.$(date +%s) + - name: Bump version for dev release + if: '! steps.check-version.outputs.tag' + run: | + VERSION=$(grep "^version =" pyproject.toml | sed 's/version = "\(.*\)"/\1/') + uvx --from=toml-cli toml set --toml-path=pyproject.toml project.version $VERSION.dev.$(date +%s) - - name: Build package - run: | - poetry build --ansi + - name: Build package + run: uv build - - name: Publish package on PyPI - if: steps.check-version.outputs.tag - uses: pypa/gh-action-pypi-publish@v1.8.10 - with: - user: __token__ - password: ${{ secrets.PYPI_API_TOKEN }} + - name: Publish package on PyPI + if: steps.check-version.outputs.tag + uses: pypa/gh-action-pypi-publish@release/v1 - - name: Publish package on TestPyPI - if: "! steps.check-version.outputs.tag" - uses: pypa/gh-action-pypi-publish@v1.8.10 - with: - user: __token__ - password: ${{ secrets.TEST_PYPI_API_TOKEN }} - repository_url: https://test.pypi.org/legacy/ + - name: Publish package on TestPyPI + if: '! steps.check-version.outputs.tag' + uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: https://test.pypi.org/legacy/ - - name: Publish the release notes - uses: release-drafter/release-drafter@v5.25.0 - with: - publish: ${{ steps.check-version.outputs.tag != '' }} - tag: ${{ steps.check-version.outputs.tag }} - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + - name: Publish the release notes + uses: release-drafter/release-drafter@v6 + with: + publish: ${{ steps.check-version.outputs.tag != '' }} + tag: ${{ steps.check-version.outputs.tag }} + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml deleted file mode 100644 index 17e6d15..0000000 --- a/.github/workflows/tests.yml +++ /dev/null @@ -1,161 +0,0 @@ -name: Tests - -on: - push: - branches: - - master - pull_request: - branches: - - master - -jobs: - tests: - name: ${{ matrix.session }} ${{ matrix.python }} / ${{ matrix.os }} - runs-on: ${{ matrix.os }} - strategy: - fail-fast: false - matrix: - include: - - { python: "3.11", os: "ubuntu-latest", session: "pre-commit" } - - { python: "3.11", os: "ubuntu-latest", session: "mypy" } - - { python: "3.10", os: "ubuntu-latest", session: "mypy" } - - { python: "3.9", os: "ubuntu-latest", session: "mypy" } - - { python: "3.11", os: "ubuntu-latest", session: "tests" } - - { python: "3.10", os: "ubuntu-latest", session: "tests" } - - { python: "3.9", os: "ubuntu-latest", session: "tests" } - - { python: "3.11", os: "windows-latest", session: "tests" } - - { python: "3.10", os: "windows-latest", session: "tests" } - - { python: "3.9", os: "windows-latest", session: "tests" } - - { python: "3.11", os: "macos-latest", session: "tests" } - - { python: "3.10", os: "macos-latest", session: "tests" } - - { python: "3.9", os: "macos-latest", session: "tests" } - - { python: "3.10", os: "ubuntu-latest", session: "docs-build" } - - env: - NOXSESSION: ${{ matrix.session }} - FORCE_COLOR: "1" - PRE_COMMIT_COLOR: "always" - - steps: - - name: Check out the repository - uses: actions/checkout@v4 - - - name: Set up Python ${{ matrix.python }} - uses: actions/setup-python@v4 - with: - python-version: ${{ matrix.python }} - - - name: Upgrade pip - run: | - pip install --constraint=.github/workflows/constraints.txt pip - pip --version - - - name: Upgrade pip in virtual environments - shell: python - run: | - import os - import pip - - with open(os.environ["GITHUB_ENV"], mode="a") as io: - print(f"VIRTUALENV_PIP={pip.__version__}", file=io) - - - name: Install Poetry - run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry - poetry --version - - - name: Install Nox - run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox - pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry - nox --version - - - name: Install pandoc - if: matrix.session == 'docs-build' - uses: pandoc/actions/setup@v1 - - - name: Compute pre-commit cache key - if: matrix.session == 'pre-commit' - id: pre-commit-cache - shell: python - run: | - import hashlib - import sys - - python = "py{}.{}".format(*sys.version_info[:2]) - payload = sys.version.encode() + sys.executable.encode() - digest = hashlib.sha256(payload).hexdigest() - result = "${{ runner.os }}-{}-{}-pre-commit".format(python, digest[:8]) - - print("::set-output name=result::{}".format(result)) - - - name: Restore pre-commit cache - uses: actions/cache@v3 - if: matrix.session == 'pre-commit' - with: - path: ~/.cache/pre-commit - key: ${{ steps.pre-commit-cache.outputs.result }}-${{ hashFiles('.pre-commit-config.yaml') }} - restore-keys: | - ${{ steps.pre-commit-cache.outputs.result }}- - - - name: Run Nox - run: | - nox --python=${{ matrix.python }} - - - name: Upload coverage data - if: always() && matrix.session == 'tests' - uses: "actions/upload-artifact@v3" - with: - name: coverage-data - path: ".coverage.*" - - - name: Upload documentation - if: matrix.session == 'docs-build' - uses: actions/upload-artifact@v3 - with: - name: docs - path: docs/_build - - coverage: - runs-on: ubuntu-latest - needs: tests - steps: - - name: Check out the repository - uses: actions/checkout@v4 - - - name: Set up Python - uses: actions/setup-python@v4 - with: - python-version: "3.11" - - - name: Upgrade pip - run: | - pip install --constraint=.github/workflows/constraints.txt pip - pip --version - - - name: Install Poetry - run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry - poetry --version - - - name: Install Nox - run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox - pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry - nox --version - - - name: Download coverage data - uses: actions/download-artifact@v3 - with: - name: coverage-data - - - name: Combine coverage data and display human readable report - run: | - nox --session=coverage - - - name: Create coverage report - run: | - nox --session=coverage -- xml -i - - - name: Upload coverage report - uses: codecov/codecov-action@v3.1.4 diff --git a/.gitignore b/.gitignore index d063050..d1e741e 100644 --- a/.gitignore +++ b/.gitignore @@ -1,52 +1,38 @@ -# Compiled python modules. -*.pyc - -# Setuptools distribution folder. -dist/ +# python generated files +__pycache__/ +*.py[oc] build/ +dist/ +wheels/ +*.egg-info -# Common virtual environments -.venv/ -.env/ -.python-version +# venv +.venv # doc generated docs/_build docs/gen -# Python egg metadata, regenerated from source files by setuptools. -*.egg-info -src/*.egg-info/ - -# Pycharm IDE file folder -.idea/ - -# vscode -.vscode/ -*.code-workspace +# pytest +.pytest_cache +.benchmarks/ -# mac -.DS_Store +# benchmark results +.benchmarks/ # coverage reports .coverage .coverage.* +htmlcov/ -# nox -.nox/ - -# cache -__pycache__/ -.pytest_cache - -# Jupyter Notebook +# jupyter notebook .ipynb_checkpoints -# benchmark results -.benchmarks/ +# ruff +.ruff_cache -# mypy cache -.mypy_cache/ +# mac +.DS_Store # code testing sandbox sandbox/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1cea48f..ece2440 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,81 +1,18 @@ repos: - - repo: local - hooks: - - id: black - name: black - entry: black - language: system - types: [python] - require_serial: true - - id: check-added-large-files - name: Check for added large files - entry: check-added-large-files - language: system - - id: check-toml - name: Check Toml - entry: check-toml - language: system - types: [toml] - - id: check-yaml - name: Check Yaml - entry: check-yaml - language: system - types: [yaml] - - id: darglint - name: darglint - entry: darglint - language: system - types: [python] - stages: [manual] - - id: end-of-file-fixer - name: Fix End of Files - entry: end-of-file-fixer - language: system - types: [text] - stages: [commit, push, manual] - - id: flake8 - name: flake8 - entry: flake8 - language: system - types: [python] - require_serial: true - args: [--darglint-ignore-regex, .*] - - id: isort - name: isort - entry: isort - require_serial: true - language: system - types_or: [cython, pyi, python] - args: ["--filter-files"] - - id: pyupgrade - name: pyupgrade - description: Automatically upgrade syntax for newer versions. - entry: pyupgrade - language: system - types: [python] - args: [--py39-plus] - - id: trailing-whitespace - name: Trim Trailing Whitespace - entry: trailing-whitespace-fixer - language: system - types: [text] - stages: [commit, push, manual] - - repo: https://github.com/pre-commit/mirrors-prettier - rev: v3.0.3 - hooks: - - id: prettier - - repo: https://github.com/kynan/nbstripout - rev: 0.6.1 - hooks: - - id: nbstripout - - repo: https://github.com/nbQA-dev/nbQA - rev: 1.7.0 - hooks: - - id: nbqa-black - additional_dependencies: [black==23.9.1] - - id: nbqa-pyupgrade - additional_dependencies: [pyupgrade==3.14.0] - args: ["--py39-plus"] - - id: nbqa-isort - additional_dependencies: [isort==5.12.0] - args: [--profile=black] +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v5.0.0 + hooks: + - id: check-yaml + - id: check-toml + - id: end-of-file-fixer + - id: trailing-whitespace +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.11.7 + hooks: + - id: ruff + args: [--fix] + - id: ruff-format +- repo: https://github.com/kynan/nbstripout + rev: 0.8.1 + hooks: + - id: nbstripout diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..3a4f41e --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.13 \ No newline at end of file diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 9f1451f..e938827 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -1,26 +1,20 @@ -# Required -version: 2 +# version: 2 -# Set the version of Python and other tools you might need build: - os: ubuntu-22.04 + os: ubuntu-24.04 tools: - python: "3.10" + python: "3.13" jobs: - # gmsh requires the no X Windows version for CI linux - post_install: - - pip install -i https://gmsh.info/python-packages-dev-nox --force-reinstall gmsh==4.11.1.dev1+nox - -# Build documentation in the docs/ directory with Sphinx -sphinx: - configuration: docs/conf.py - -# Default is HTML -# formats: all - -# Optionally declare the Python requirements required to build your docs -python: - install: - - requirements: docs/requirements.txt - - method: pip - path: . + # https://docs.readthedocs.com/platform/stable/build-customization.html#install-dependencies-with-uv + pre_create_environment: + - asdf plugin add uv + - asdf install uv 0.6.17 + - asdf global uv 0.6.17 + - uv python install 3.13 + create_environment: + - uv venv -p 3.13 + install: + - uv sync --locked --only-group docs + build: + html: + - uv run sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 656a82d..6f1a075 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,8 +1,6 @@ # Contributor Guide -Thank you for your interest in improving this project. -This project is open-source under the [MIT license] and -welcomes contributions in the form of bug reports, feature requests, and pull requests. +Thank you for your interest in improving this project. This project is open-source under the [MIT license] and welcomes contributions in the form of bug reports, feature requests, and pull requests. Here is a list of important resources for contributors: @@ -28,118 +26,103 @@ When filing an issue, make sure to answer these questions: - What did you expect to see? - What did you see instead? -The best way to get your bug fixed is to provide a test case, -and/or steps to reproduce the issue. +The best way to get your bug fixed is to provide a test case, and/or steps to reproduce the issue. ## How to request a feature -Features that improve `planestress` can be suggested on the [Issue Tracker]. -It's a good idea to first submit the proposal as a feature request prior to submitting -a pull request as this allows for the best coordination of efforts by preventing the -duplication of work, and allows for feedback on your ideas. +Features that improve `planestress` can be suggested on the [Issue Tracker]. It's a good idea to first submit the proposal as a feature request prior to submitting a pull request as this allows for the best coordination of efforts by preventing the duplication of work, and allows for feedback on your ideas. ## How to set up your development environment -You need Python 3.9, 3.10 or 3.11, and the following tools: +`planestress` uses `uv` for python project management. `uv` can be installed on using the standalone installer: -- [Poetry] -- [Nox] -- [nox-poetry] +```shell +curl -LsSf https://astral.sh/uv/install.sh | sh +``` -Recommended dependency installation method: +Installation instructions for other methods and Windows can be found [here](https://docs.astral.sh/uv/getting-started/installation/). -1. Install [pipx](https://pypa.github.io/pipx/installation/): +`uv` can then be used to install the latest compatible version of python: ```shell -python3 -m pip install --user pipx -python3 -m pipx ensurepath +uv python install 3.13 ``` -2. Install [Poetry]: +`planestressd` and it's development dependencies can be installed with: ```shell -pipx install poetry -poetry --version +uv sync ``` -3. Install [Nox] and [nox-poetry]: +If you want to build the documentation locally, you will need to install `pandoc`. The [installation method](https://pandoc.org/installing.html) depends on what OS you are running. + +To run a script using the development virtual environment, you can run: ```shell -pipx install nox -pipx inject nox nox-poetry +uv run example.py ``` -4. If you do not have `pandoc` installed, it will be required to build the docs. The - [installation method](https://pandoc.org/installing.html) depends on what OS you are - running. +Refer to the `uv` [documentation](https://docs.astral.sh/uv/) for more information relating to using `uv` for project management. -Now that you have all the dependencies up and running, you can install -`planestress` with development requirements: +## How to test the project -```shell -git clone https://github.com/robbievanleeuwen/plane-stress.git -cd plane-stress -poetry install -``` +### Pre-commit + +[Pre-commit](https://pre-commit.com/) ensures code quality and consistency by running the `ruff` linter and formatter, stripping out execution cells in jupyter notebooks, and running several pre-commit hooks. -Install with the `rhino` and `cad` extras: +These can be run against all files in the project with: ```shell -poetry install --extras "dxf rhino" +uv run pre-commit run --all-files ``` -You can now run an interactive Python session, or the command-line interface: +However, the best way to ensure code quality is by installing the git pre-commit hook: ```shell -poetry run python -poetry run planestress +uv run pre-commit install ``` -[poetry]: https://python-poetry.org/ -[nox]: https://nox.thea.codes/ -[nox-poetry]: https://nox-poetry.readthedocs.io/ +This will run `pre-commit` against all changed files when attempting to `git commit`. You will need to fix the offending files prior to being able to commit a change unless you run `git commit --no-verify`. -## How to test the project +### Type Checking -Run the full test suite: +`planestress` uses `pyright` to ensure strict type-checking where possible. `pyright` can be run on all files with: ```shell -nox +uv run pyright ``` -List the available Nox sessions: +### Tests + +The `planestress` tests are located in the `tests/` directory and are written using the [pytest] testing framework. The test suite can be run with: ```shell -nox --list-sessions +uv run pytest -m 'not benchmark_suite' ``` -You can also run a specific Nox session. For example, invoke the unit test suite like -this: +#### Benchmarks + +If the code you are modifying may affect the performance of `planestress`, it is recommended that you run the benchmarking tests to verify the performance before and after your changes. There is currently only one benchmarking suite: `analysis`. This can be run like this: ```shell -nox --session=tests +uv run pytest -m benchmark_analysis ``` -Unit tests are located in the _tests_ directory, and are written using the [pytest] -testing framework. +Note that a plot of the results can be generated by adding the `--benchmark-histogram` option to the above commands. + +[pytest]: https://pytest.readthedocs.io/ -### Benchmarks +### Documentation -If the code you are modifying may affect the performance of `planestress`, it is -recommended that you run the benchmarking tests to verify the performance before and -after your changes. There are three different benchmarking suites: `geometry`, `meshing` -and `analysis`. These can be run like this: +You can build the documentation locally with: ```shell -poetry run pytest -m benchmark_geom -poetry run pytest -m benchmark_mesh -poetry run pytest -m benchmark_analysis +uv run sphinx-build docs docs/_build ``` -Note that a plot of the results can be generated by adding the `--benchmark-histogram` -option to the above commands. +Make sure that you have a recent version of `pandoc` installed so that the example notebooks can be generated. -[pytest]: https://pytest.readthedocs.io/ +Note that all pull requests also build the documentation on Read the Docs, so building the documentation locally is not required. ## How to submit changes @@ -147,19 +130,11 @@ Open a [pull request] to submit changes to this project. Your pull request needs to meet the following guidelines for acceptance: -- The Nox test suite must pass without errors and warnings. +- The test suite, pre-commit and pyright checks must pass without errors and warnings. - Include unit tests. This project aims for a high code coverage. - If your changes add functionality, update the documentation accordingly. -To run linting and code formatting checks before committing your change, you can install -pre-commit as a Git hook by running the following command: - -```shell -nox --session=pre-commit -- install -``` - -It is recommended to open an issue before starting work on anything. -This will allow a chance to talk it over with the owners and validate your approach. +It is recommended to open an issue before starting work on anything. This will allow a chance to talk it over with the owners and validate your approach. [pull request]: https://github.com/robbievanleeuwen/plane-stress/pulls [code of conduct]: CODE_OF_CONDUCT.md diff --git a/LICENSE b/LICENSE index 979cef7..3bd158a 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright © 2023 Robbie van Leeuwen +Copyright © 2025 Robbie van Leeuwen Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/README.md b/README.md index 7bbf6ba..5efb6e2 100644 --- a/README.md +++ b/README.md @@ -1,23 +1,25 @@ -# `planestress` +# planestress [![PyPI](https://img.shields.io/pypi/v/planestress.svg)][pypi_] [![Status](https://img.shields.io/pypi/status/planestress.svg)][status] [![Python Version](https://img.shields.io/pypi/pyversions/planestress)][python version] [![License](https://img.shields.io/pypi/l/planestress)][license] [![Read the documentation at https://plane-stress.readthedocs.io/](https://img.shields.io/readthedocs/plane-stress/stable.svg?label=Read%20the%20Docs)][read the docs] -[![Tests](https://github.com/robbievanleeuwen/plane-stress/workflows/Tests/badge.svg)][tests] -[![Codecov](https://codecov.io/gh/robbievanleeuwen/plane-stress/branch/master/graph/badge.svg)][codecov] +[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)][uv] +[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)][ruff] [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)][pre-commit] -[![Black](https://img.shields.io/badge/code%20style-black-000000.svg)][black] +[![Tests](https://github.com/robbievanleeuwen/plane-stress/actions/workflows/ci.yml/badge.svg?branch=master)][tests] +[![Codecov](https://codecov.io/gh/robbievanleeuwen/plane-stress/branch/master/graph/badge.svg)][codecov] [pypi_]: https://pypi.org/project/planestress/ [status]: https://pypi.org/project/planestress/ [python version]: https://pypi.org/project/planestress [read the docs]: https://plane-stress.readthedocs.io/ -[tests]: https://github.com/robbievanleeuwen/plane-stress/actions?workflow=Tests -[codecov]: https://app.codecov.io/gh/robbievanleeuwen/plane-stress +[uv]: https://github.com/astral-sh/uv +[ruff]: https://github.com/astral-sh/ruff [pre-commit]: https://github.com/pre-commit/pre-commit -[black]: https://github.com/psf/black +[tests]: https://github.com/robbievanleeuwen/plane-stress/actions/workflows/ci.yml +[codecov]: https://app.codecov.io/gh/robbievanleeuwen/plane-stress `planestress` is a python package for the analysis of 2D plane-stress problems using the finite element method. @@ -65,16 +67,9 @@ Alternatively you can get support on the the collaboration of many contributors. Although efforts have been made to ensure the that relevant engineering theories have been correctly implemented, it remains the user's responsibility to confirm and accept the output. Refer to the -[license](LICENSE.md) for clarification of the conditions of use. - -## Credits - -This project was generated from [@cjolowicz]'s [Hypermodern Python Cookiecutter] -template. +[license][license] for clarification of the conditions of use. -[@cjolowicz]: https://github.com/cjolowicz [pypi]: https://pypi.org/ -[hypermodern python cookiecutter]: https://github.com/cjolowicz/cookiecutter-hypermodern-python [pip]: https://pip.pypa.io/ [license]: https://github.com/robbievanleeuwen/plane-stress/blob/master/LICENSE [contributor guide]: https://github.com/robbievanleeuwen/plane-stress/blob/master/CONTRIBUTING.md diff --git a/docs/conf.py b/docs/conf.py index a7c6315..e8dc03c 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -3,7 +3,7 @@ # project information project = "planestress" author = "Robbie van Leeuwen" -copyright = "2023, Robbie van Leeuwen" +copyright = "2025, Robbie van Leeuwen" # noqa: A001 # sphinx config templates_path = ["_templates"] @@ -18,7 +18,6 @@ "sphinx.ext.viewcode", "matplotlib.sphinxext.plot_directive", "nbsphinx", - "sphinx_click", "sphinx_copybutton", "sphinxext.opengraph", ] diff --git a/docs/examples/test.ipynb b/docs/examples/test.ipynb index 98b8e2b..8475d45 100644 --- a/docs/examples/test.ipynb +++ b/docs/examples/test.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "markdown", - "id": "a1ec20b5-67e4-434e-acde-20930db01640", + "id": "0", "metadata": {}, "source": [ "# Test Example" @@ -11,7 +11,7 @@ { "cell_type": "code", "execution_count": null, - "id": "ddb3c757-18a2-439c-88d7-e745a8c089f1", + "id": "1", "metadata": {}, "outputs": [], "source": [ @@ -24,7 +24,7 @@ { "cell_type": "code", "execution_count": null, - "id": "7ff5d93f-26b2-4020-a2d9-c0b7236bfab0", + "id": "2", "metadata": {}, "outputs": [], "source": [ @@ -39,7 +39,7 @@ { "cell_type": "code", "execution_count": null, - "id": "dd544d96-0d91-4671-942f-55b61e723016", + "id": "3", "metadata": {}, "outputs": [], "source": [ @@ -53,7 +53,7 @@ { "cell_type": "code", "execution_count": null, - "id": "b13fabea-aae6-4e11-8dae-4555bfd40afb", + "id": "4", "metadata": {}, "outputs": [], "source": [ @@ -66,7 +66,7 @@ { "cell_type": "code", "execution_count": null, - "id": "e09e630c-d1ec-498a-8290-0f398e00ee35", + "id": "5", "metadata": {}, "outputs": [], "source": [ @@ -77,7 +77,7 @@ { "cell_type": "code", "execution_count": null, - "id": "dc0e76bb-c241-4bb3-8d1c-11c1c8e07c49", + "id": "6", "metadata": {}, "outputs": [], "source": [ @@ -89,7 +89,7 @@ { "cell_type": "code", "execution_count": null, - "id": "a371acf6-e58e-40d9-b9e8-e680b6a714e7", + "id": "7", "metadata": {}, "outputs": [], "source": [ @@ -99,7 +99,7 @@ { "cell_type": "code", "execution_count": null, - "id": "df6f9d6a-8550-40eb-bcc4-2f83f50c4f50", + "id": "8", "metadata": {}, "outputs": [], "source": [ @@ -111,7 +111,7 @@ { "cell_type": "code", "execution_count": null, - "id": "5df6a4c0-00c9-4f2d-ba9c-384852791454", + "id": "9", "metadata": {}, "outputs": [], "source": [ @@ -125,7 +125,7 @@ { "cell_type": "code", "execution_count": null, - "id": "b3ed57a9-a688-4744-b678-0f84b74c1990", + "id": "10", "metadata": {}, "outputs": [], "source": [ diff --git a/docs/installation.rst b/docs/installation.rst index 6ae4657..2e43ce5 100644 --- a/docs/installation.rst +++ b/docs/installation.rst @@ -4,7 +4,7 @@ Installation ============ These instructions will get you a copy of ``planestress`` up and running on your -machine. You will need a working copy of python 3.9, 3.10 or 3.11 to get started. +machine. You will need a working copy of python 3.11, 3.12 or 3.13 to get started. Installing ``planestress`` -------------------------------- @@ -14,8 +14,7 @@ the plane-stress geometry and `gmsh `_ to generate a triangu rectangular mesh. `numpy `_ and `scipy `_ are used to aid finite element computations, while `matplotlib `_ and -`rich `_ are used for post-processing. Finally, -`click `_ is used to power the ``planestress`` CLI. +`rich `_ are used for post-processing. ``planestress`` and all of its dependencies can be installed through the python package index: diff --git a/docs/requirements.txt b/docs/requirements.txt deleted file mode 100644 index d7be5f2..0000000 --- a/docs/requirements.txt +++ /dev/null @@ -1,10 +0,0 @@ -furo==2023.9.10 -ipykernel==6.26.0 -ipython==8.16.1 -ipywidgets==8.1.1 -nbconvert==7.9.2 -nbsphinx==0.9.3 -sphinx==7.2.6 -sphinx-click==5.0.1 -sphinx-copybutton==0.5.2 -sphinxext-opengraph==0.8.2 diff --git a/noxfile.py b/noxfile.py deleted file mode 100644 index 8c823cf..0000000 --- a/noxfile.py +++ /dev/null @@ -1,296 +0,0 @@ -"""Nox sessions.""" -import os -import platform -import shlex -import shutil -import sys -from pathlib import Path -from textwrap import dedent - -import nox - - -try: - from nox_poetry import Session, session -except ImportError: - message = f"""\ - Nox failed to import the 'nox-poetry' package. - - Please install it using the following command: - - {sys.executable} -m pip install nox-poetry""" - raise SystemExit(dedent(message)) from None - - -package = "planestress" -python_versions = ["3.11", "3.10", "3.9"] -nox.needs_version = ">= 2021.6.6" -nox.options.sessions = ( - "pre-commit", - "mypy", - "tests", - "docs-build", -) - - -def activate_virtualenv_in_precommit_hooks(session: Session) -> None: - """Activate virtualenv in hooks installed by pre-commit. - - This function patches git hooks installed by pre-commit to activate the - session's virtual environment. This allows pre-commit to locate hooks in - that environment when invoked from git. - - Args: - session: The Session object. - """ - assert session.bin is not None # noqa: S101 - - # Only patch hooks containing a reference to this session's bindir. Support - # quoting rules for Python and bash, but strip the outermost quotes so we - # can detect paths within the bindir, like /python. - bindirs = [ - bindir[1:-1] if bindir[0] in "'\"" else bindir - for bindir in (repr(session.bin), shlex.quote(session.bin)) - ] - - virtualenv = session.env.get("VIRTUAL_ENV") - if virtualenv is None: - return - - headers = { - # pre-commit < 2.16.0 - "python": f"""\ - import os - os.environ["VIRTUAL_ENV"] = {virtualenv!r} - os.environ["PATH"] = os.pathsep.join(( - {session.bin!r}, - os.environ.get("PATH", ""), - )) - """, - # pre-commit >= 2.16.0 - "bash": f"""\ - VIRTUAL_ENV={shlex.quote(virtualenv)} - PATH={shlex.quote(session.bin)}"{os.pathsep}$PATH" - """, - # pre-commit >= 2.17.0 on Windows forces sh shebang - "/bin/sh": f"""\ - VIRTUAL_ENV={shlex.quote(virtualenv)} - PATH={shlex.quote(session.bin)}"{os.pathsep}$PATH" - """, - } - - hookdir = Path(".git") / "hooks" - if not hookdir.is_dir(): - return - - for hook in hookdir.iterdir(): - if hook.name.endswith(".sample") or not hook.is_file(): - continue - - if not hook.read_bytes().startswith(b"#!"): - continue - - text = hook.read_text() - - if not any( - Path("A") == Path("a") and bindir.lower() in text.lower() or bindir in text - for bindir in bindirs - ): - continue - - lines = text.splitlines() - - for executable, header in headers.items(): - if executable in lines[0].lower(): - lines.insert(1, dedent(header)) - hook.write_text("\n".join(lines)) - break - - -@session(name="pre-commit", python=python_versions[0]) -def precommit(session: Session) -> None: - """Lint using pre-commit. - - Args: - session: Nox session - """ - args = session.posargs or [ - "run", - "--all-files", - "--hook-stage=manual", - "--show-diff-on-failure", - ] - session.install( - "black", - "darglint", - "flake8", - "flake8-bugbear", - "flake8-docstrings", - "flake8-pytest-style", - "flake8-rst-docstrings", - "isort", - "pep8-naming", - "pre-commit", - "pre-commit-hooks", - "pyupgrade", - ) - session.run("pre-commit", *args) - if args and args[0] == "install": - activate_virtualenv_in_precommit_hooks(session) - - -@session(python=python_versions) -def mypy(session: Session) -> None: - """Type-check using mypy. - - Args: - session: Nox session - """ - args = session.posargs or ["src", "docs/conf.py"] - session.install(".") - session.install("mypy", "pytest") - session.run("mypy", *args) - if not session.posargs: - session.run("mypy", f"--python-executable={sys.executable}", "noxfile.py") - - -@session(python=python_versions) -def tests(session: Session) -> None: - """Run the test suite. - - Args: - session: Nox session - """ - session.install(".") - - # linux CI needs the no X Windows versions of gmsh - if platform.system().lower() == "linux": - session.run( - "pip", - "install", - "-i", - "https://gmsh.info/python-packages-dev-nox", - "--force-reinstall", - "gmsh==4.11.1.dev1+nox", - ) - - # install relevant tooling - session.install("coverage[toml]", "pytest", "pygments", "pytest-check") - - try: - session.run( - "coverage", - "run", - "--parallel", - "-m", - "pytest", - "-m", - "not benchmark_suite", - *session.posargs, - ) - finally: - if session.interactive: - session.notify("coverage", posargs=[]) - - -@session(python=python_versions[0]) -def coverage(session: Session) -> None: - """Produce the coverage report. - - Args: - session: Nox session - """ - args = session.posargs or ["report", "-i"] - - session.install("coverage[toml]") - - if not session.posargs and any(Path().glob(".coverage.*")): - session.run("coverage", "combine") - - session.run("coverage", *args) - - -@session(name="docs-build", python=python_versions[1]) -def docs_build(session: Session) -> None: - """Build the documentation. - - Args: - session: Nox session - """ - args = session.posargs or ["docs", "docs/_build"] - if not session.posargs and "FORCE_COLOR" in os.environ: - args.insert(0, "--color") - - session.install(".") - - # linux CI needs the no X Windows versions of gmsh - if platform.system().lower() == "linux": - session.run( - "pip", - "install", - "-i", - "https://gmsh.info/python-packages-dev-nox", - "--force-reinstall", - "gmsh==4.11.1.dev1+nox", - ) - - session.install( - "furo", - "ipykernel", - "ipython", - "ipywidgets", - "nbconvert", - "nbsphinx", - "sphinx", - "sphinx-click", - "sphinx-copybutton", - "sphinxext-opengraph", - ) - - build_dir = Path("docs", "_build") - if build_dir.exists(): - shutil.rmtree(build_dir) - - session.run("sphinx-build", *args) - - -@session(python=python_versions[1]) -def docs(session: Session) -> None: - """Build and serve the documentation with live reloading on file changes. - - Args: - session: Nox session - """ - args = session.posargs or ["--open-browser", "docs", "docs/_build"] - session.install(".") - - # linux CI needs the no X Windows versions of gmsh - if platform.system().lower() == "linux": - session.run( - "pip", - "install", - "-i", - "https://gmsh.info/python-packages-dev-nox", - "--force-reinstall", - "gmsh==4.11.1.dev1+nox", - ) - - session.install( - "furo", - "ipykernel", - "ipython", - 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-[extras] -pardiso = ["intel-openmp", "pypardiso"] - -[metadata] -lock-version = "2.0" -python-versions = ">=3.9.0,<3.12" -content-hash = "b44641fb1014dfc4d2c61caefe3dd88143ff6db03bb8fdce7d784af085d37c79" diff --git a/pyproject.toml b/pyproject.toml index 23c175d..c615b70 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,18 +1,15 @@ -[tool.poetry] +[project] name = "planestress" version = "0.0.4" description = "A python package for plane stress analysis using the finite element method." -license = "MIT" +readme = "README.md" +license = {file = "LICENSE"} authors = [ - "Robbie van Leeuwen ", + { name = "Robbie van Leeuwen", email = "robbie.vanleeuwen@gmail.com" } ] maintainers = [ - "Robbie van Leeuwen ", + { name = "Robbie van Leeuwen", email = "robbie.vanleeuwen@gmail.com" }, ] -readme = "README.md" -homepage = "https://github.com/robbievanleeuwen/plane-stress" -repository = "https://github.com/robbievanleeuwen/plane-stress" -documentation = "https://plane-stress.readthedocs.io" keywords = [ "plane-stress", "structural-engineering", @@ -25,70 +22,70 @@ classifiers = [ "Environment :: Console", "License :: OSI Approved :: MIT License", "Natural Language :: English", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", ] -packages = [ - { include = "planestress", from = "src" }, - { include = "src/planestress/py.typed" }, +requires-python = ">=3.11,<3.14" +dependencies = [ + "numpy~=2.2", + "scipy~=1.14", + "matplotlib~=3.9", + "shapely~=2.0", + "gmsh~=4.13", + "numba~=0.61", + "rich[jupyter]~=14.0", ] -include = [] -[tool.poetry.urls] +[project.urls] +Homepage = "https://plane-stress.readthedocs.io" +Documentation = "https://plane-stress.readthedocs.io" +Repository = "https://github.com/robbievanleeuwen/plane-stress" +Issues = "https://github.com/robbievanleeuwen/plane-stress/issues" Changelog = "https://github.com/robbievanleeuwen/plane-stress/releases" -"Bug Tracker" = "https://github.com/robbievanleeuwen/plane-stress/issues" -[tool.poetry.dependencies] -python = ">=3.9.0,<3.12" -numpy = "^1.24.0" -scipy = "^1.10.0" -matplotlib = "^3.8.0" -shapely = "^2.0.2" -gmsh = "^4.11.1" -numba = "^0.58.1" -rich = "^13.5.0" -click = "^8.1.7" -pypardiso = { version = "^0.4.3", optional = true } -intel-openmp = { version = "==2023.2.0", optional = true } +[project.optional-dependencies] +pardiso = [ + "pypardiso~=0.4; platform_system == 'Windows' or platform_system == 'Linux'" +] -[tool.poetry.group.dev.dependencies] -black = "^23.10.1" -coverage = { extras = ["toml"], version = "^7.3.2" } -darglint = "^1.8.1" -flake8 = "^6.1.0" -flake8-bugbear = "^23.9.16" -flake8-docstrings = "^1.7.0" -flake8-pytest-style = "^1.7.2" -flake8-rst-docstrings = "^0.3.0" -furo = "^2023.9.10" -ipykernel = "^6.26.0" -ipython = "^8.16.1" -ipywidgets = "^8.1.1" -isort = "^5.12.0" -mypy = "^1.6.1" -nbconvert = "^7.9.2" -nbsphinx = "^0.9.3" -notebook = "^7.0.6" -pep8-naming = "^0.13.3" -pre-commit = "^3.5.0" -pre-commit-hooks = "^4.5.0" -Pygments = "^2.16.1" -pytest = "^7.4.3" -pytest-benchmark = { extras = ["histogram"], version = "^4.0.0" } -pytest-check = "^2.2.2" -pyupgrade = "^3.15.0" -sphinx = "^7.2.6" -sphinx-autobuild = "^2021.3.14" -sphinx-click = "^5.0.1" -sphinx-copybutton = "^0.5.2" -sphinxext-opengraph = "^0.8.2" +[dependency-groups] +dev = [ + "ipympl==0.9.7", + "notebook==7.4.1", + "sphinx-autobuild==2024.10.03", +] +docs = [ + "furo==2024.8.6", + "sphinx==8.1.3", # nbsphinx requies sphinx<8.2 for now + "ipykernel==6.29.5", + "ipython==9.2.0", + "nbsphinx==0.9.7", + "nbconvert==7.16.6", + "sphinx-copybutton==0.5.2", + "sphinxext-opengraph==0.10.0", +] +lint = [ + "pre-commit==4.2.0", + "pyright==1.1.400", +] +test = [ + "pytest==8.3.5", + "pytest-benchmark[histogram]==5.1.0", + "pytest-check==2.5.3", + "coverage[toml]==7.8.0", +] -[tool.poetry.extras] -pardiso = ["pypardiso", "intel-openmp"] +[tool.uv] +default-groups = ["dev", "docs", "lint", "test"] -[tool.poetry.scripts] -planestress = "planestress.__main__:main" +[tool.pyright] +venvPath = "." +venv = ".venv" +pythonVersion = "3.11" +include = ["src"] +exclude = ["**/__init__.py"] +strict = ["src"] [tool.coverage.paths] source = ["src", "*/site-packages"] @@ -99,31 +96,6 @@ branch = true source = ["planestress", "tests"] omit = ["*/benchmarks/*"] -[tool.coverage.report] -show_missing = true - -[tool.isort] -profile = "black" -lines_after_imports = 2 - -[tool.mypy] -strict = true -# output formatting -pretty = true -show_column_numbers = true -show_error_context = true - -[[tool.mypy.overrides]] -module = [ - "gmsh.*", - "mpl_toolkits.*", - "numba.*", - "pypardiso.*", - "scipy.*", - "shapely.*", -] -ignore_missing_imports = true - [tool.pytest.ini_options] markers = [ "benchmark_suite: entire benchmark test suite (select with '-m benchmark_suite')", @@ -131,5 +103,5 @@ markers = [ ] [build-system] -requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" diff --git a/ruff.toml b/ruff.toml new file mode 100644 index 0000000..ee18c26 --- /dev/null +++ b/ruff.toml @@ -0,0 +1,54 @@ +target-version = "py311" + +[lint] +select = [ + "A", # warn about shadowing built-ins + "B", # flake8-bugbear + "C4", # flake8-comprehensions + "COM", # flake8-commas + "D", # pydocstyle + "DOC", # pydoclint + "E", # pycodestyle errors + "EM", # flake8-errmsg + "F", # pyflakes + "FA", # flake8-future-annotations + "I", # isort + "ICN", # flake8-import-conventions + "ISC", # flake8-implicit-str-concat + "N", # pep8-naming + "NPY", # NumPy-specific rules + "NPY201", # NumPy v2 compatibility checks + "PERF", # Perflint + "PT", # flake8-pytest-style + "RUF", # Ruff-specific + "S", # flake8-bandit + "SIM", # flake8-simplify + "TCH", # flake8-type-checking + "UP", # pyupgrade + "W", # pycodestyle warnings +] +ignore = [ + # recommended ignores per ruff + "W191", # tab-indentation + "E111", # indentation-with-invalid-multiple + "E114", # indentation-with-invalid-multiple-comment + "E117", # over-indented + "D206", # indent-with-spaces + "D300", # triple-single-quotes + "COM812", # missing-trailing-comma + "COM819", # prohibited-trailing-comma + "ISC001", # single-line-implicit-string-concatenation + "ISC002", # multi-line-implicit-string-concatenation + # others + "E741", # ambiguous-variable-name +] + +[lint.per-file-ignores] +"tests/*" = ["S101"] +"__init__.py*" = ["F401"] + +[lint.pydocstyle] +convention = "google" + +[format] +docstring-code-format = true diff --git a/src/planestress/__main__.py b/src/planestress/__main__.py deleted file mode 100644 index f706963..0000000 --- a/src/planestress/__main__.py +++ /dev/null @@ -1,12 +0,0 @@ -"""Command-line interface.""" -import click - - -@click.command() -@click.version_option() -def main() -> None: - """planestress.""" - - -if __name__ == "__main__": - main(prog_name="planestress") # pragma: no cover diff --git a/src/planestress/analysis/finite_elements/finite_element.py b/src/planestress/analysis/finite_elements/finite_element.py index 0eb8fc6..2207e17 100644 --- a/src/planestress/analysis/finite_elements/finite_element.py +++ b/src/planestress/analysis/finite_elements/finite_element.py @@ -9,7 +9,6 @@ import planestress.analysis.utils as utils - if TYPE_CHECKING: from planestress.post.results import ElementResults from planestress.pre.material import Material diff --git a/src/planestress/analysis/finite_elements/lines.py b/src/planestress/analysis/finite_elements/lines.py index 2639ca3..a298cac 100644 --- a/src/planestress/analysis/finite_elements/lines.py +++ b/src/planestress/analysis/finite_elements/lines.py @@ -48,14 +48,11 @@ def __repr__(self) -> str: Returns: String representation of the object. """ - return ( - f"{self.__class__.__name__} - id: {self.line_idx}, " - f"tag: {self.line_tag}." - ) + return f"{self.__class__.__name__} - id: {self.line_idx}, tag: {self.line_tag}." @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def shape_functions_jacobian( iso_coord: float, coords: tuple[float, ...], @@ -154,7 +151,7 @@ def __init__( @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def shape_functions_jacobian( iso_coord: float, coords: tuple[float, ...], @@ -211,7 +208,7 @@ def __init__( @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def shape_functions_jacobian( iso_coord: float, coords: tuple[float, ...], diff --git a/src/planestress/analysis/finite_elements/quad4.py b/src/planestress/analysis/finite_elements/quad4.py index d062a12..76696f4 100644 --- a/src/planestress/analysis/finite_elements/quad4.py +++ b/src/planestress/analysis/finite_elements/quad4.py @@ -13,7 +13,6 @@ from planestress.analysis.finite_elements.finite_element import FiniteElement from planestress.post.results import ElementResults - if TYPE_CHECKING: from planestress.pre.material import Material @@ -85,7 +84,7 @@ def shape_functions(iso_coords: tuple[float, float]) -> npt.NDArray[np.float64]: @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def b_matrix_jacobian( iso_coords: tuple[float, float], coords: tuple[float, ...], diff --git a/src/planestress/analysis/finite_elements/quad8.py b/src/planestress/analysis/finite_elements/quad8.py index ab85168..5817a09 100644 --- a/src/planestress/analysis/finite_elements/quad8.py +++ b/src/planestress/analysis/finite_elements/quad8.py @@ -14,7 +14,6 @@ from planestress.analysis.finite_elements.quad9 import Quad9 from planestress.post.results import ElementResults - if TYPE_CHECKING: from planestress.pre.material import Material @@ -110,7 +109,7 @@ def nodal_isoparametric_coordinates() -> list[tuple[float, float]]: @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def b_matrix_jacobian( iso_coords: tuple[float, float], coords: tuple[float, ...], diff --git a/src/planestress/analysis/finite_elements/quad9.py b/src/planestress/analysis/finite_elements/quad9.py index 38d7e7d..ba19c84 100644 --- a/src/planestress/analysis/finite_elements/quad9.py +++ b/src/planestress/analysis/finite_elements/quad9.py @@ -13,7 +13,6 @@ from planestress.analysis.finite_elements.finite_element import FiniteElement from planestress.post.results import ElementResults - if TYPE_CHECKING: from planestress.pre.material import Material @@ -112,7 +111,7 @@ def nodal_isoparametric_coordinates() -> list[tuple[float, float]]: @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def b_matrix_jacobian( iso_coords: tuple[float, float], coords: tuple[float, ...], diff --git a/src/planestress/analysis/finite_elements/tri3.py b/src/planestress/analysis/finite_elements/tri3.py index 6e4cc1d..e264bc1 100644 --- a/src/planestress/analysis/finite_elements/tri3.py +++ b/src/planestress/analysis/finite_elements/tri3.py @@ -13,7 +13,6 @@ from planestress.analysis.finite_elements.finite_element import FiniteElement from planestress.post.results import ElementResults - if TYPE_CHECKING: from planestress.pre.material import Material @@ -71,7 +70,7 @@ def __init__( @staticmethod @cache def shape_functions( - iso_coords: tuple[float, float, float] + iso_coords: tuple[float, float, float], ) -> npt.NDArray[np.float64]: """Returns the shape functions at a point for a Tri3 element. @@ -89,7 +88,7 @@ def shape_functions( @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def b_matrix_jacobian( coords: tuple[float, ...], ) -> tuple[npt.NDArray[np.float64], float]: diff --git a/src/planestress/analysis/finite_elements/tri6.py b/src/planestress/analysis/finite_elements/tri6.py index 8e21a73..b266df1 100644 --- a/src/planestress/analysis/finite_elements/tri6.py +++ b/src/planestress/analysis/finite_elements/tri6.py @@ -13,7 +13,6 @@ from planestress.analysis.finite_elements.finite_element import FiniteElement from planestress.post.results import ElementResults - if TYPE_CHECKING: from planestress.pre.material import Material @@ -65,7 +64,7 @@ def __init__( @staticmethod @cache def shape_functions( - iso_coords: tuple[float, float, float] + iso_coords: tuple[float, float, float], ) -> npt.NDArray[np.float64]: """Returns the shape functions at a point for a Tri6 element. @@ -92,7 +91,7 @@ def shape_functions( @staticmethod @cache - @njit(cache=True, nogil=True) # type: ignore + @njit(cache=True, nogil=True) def b_matrix_jacobian( iso_coords: tuple[float, float, float], coords: tuple[float, ...], diff --git a/src/planestress/analysis/plane_stress.py b/src/planestress/analysis/plane_stress.py index d566ec3..3e57d72 100644 --- a/src/planestress/analysis/plane_stress.py +++ b/src/planestress/analysis/plane_stress.py @@ -12,7 +12,6 @@ from planestress.analysis.utils import dof_map from planestress.post.results import Results - if TYPE_CHECKING: from planestress.pre.analysis_case import AnalysisCase from planestress.pre.geometry import Geometry diff --git a/src/planestress/analysis/solver.py b/src/planestress/analysis/solver.py index 12327c6..1855643 100644 --- a/src/planestress/analysis/solver.py +++ b/src/planestress/analysis/solver.py @@ -9,7 +9,6 @@ from scipy.sparse import csc_matrix from scipy.sparse.linalg import spsolve - try: import pypardiso @@ -38,7 +37,7 @@ def solve_direct( k_csc = k.tocsc() k_csc.eliminate_zeros() - return spsolve(A=k_csc, b=f) # type: ignore + return spsolve(A=k_csc, b=f) def solve_pardiso( @@ -61,7 +60,7 @@ def solve_pardiso( k_csc = csc_matrix(k) k_csc.eliminate_zeros() - return pardiso_solve(A=k_csc, b=f) # type: ignore + return pardiso_solve(A=k_csc, b=f) else: raise RuntimeError( "pypardiso not installed, install using the pardiso option, 'pip install " diff --git a/src/planestress/post/plotting.py b/src/planestress/post/plotting.py index 495ac72..11aeb0a 100644 --- a/src/planestress/post/plotting.py +++ b/src/planestress/post/plotting.py @@ -11,7 +11,6 @@ import shapely from matplotlib.patches import Polygon - if TYPE_CHECKING: import matplotlib.axes import matplotlib.figure @@ -69,9 +68,9 @@ def plotting_context( try: if axis_index is None: - axis_index = (0,) * ax.ndim # type: ignore + axis_index = (0,) * ax.ndim - ax = ax[axis_index] # type: ignore + ax = ax[axis_index] except (AttributeError, TypeError): pass # only 1 axis, not an array except IndexError as exc: @@ -80,7 +79,7 @@ def plotting_context( f"subplots: {kwargs}." ) from exc else: - fig = ax.get_figure() # type: ignore + fig = ax.get_figure() assert fig ax_supplied = True @@ -106,7 +105,7 @@ def plotting_context( if render: if pause: - plt.show() # type: ignore + plt.show() else: plt.draw() plt.pause(0.001) diff --git a/src/planestress/post/results.py b/src/planestress/post/results.py index 87a021c..2c9a1c6 100644 --- a/src/planestress/post/results.py +++ b/src/planestress/post/results.py @@ -2,8 +2,9 @@ from __future__ import annotations +from collections.abc import Callable from dataclasses import dataclass, field -from typing import TYPE_CHECKING, Any, Callable +from typing import TYPE_CHECKING, Any import matplotlib import numpy as np @@ -15,7 +16,6 @@ from planestress.analysis.utils import dof_map from planestress.post.plotting import plotting_context - if TYPE_CHECKING: import matplotlib.axes from scipy.sparse import csc_array @@ -732,7 +732,7 @@ def plot_principal_stress_vectors( # scale the color with respect to the magnitude of the vector c_unsigned = np.hypot(sigs_x, sigs_y) - c = [c_i * sign for c_i, sign in zip(c_unsigned, signs)] + c = [c_i * sign for c_i, sign in zip(c_unsigned, signs, strict=False)] c_min = min(c) c_max = max(c) diff --git a/src/planestress/pre/analysis_case.py b/src/planestress/pre/analysis_case.py index e4db6c7..4e0a794 100644 --- a/src/planestress/pre/analysis_case.py +++ b/src/planestress/pre/analysis_case.py @@ -8,7 +8,6 @@ import planestress.post.plotting as plotting import planestress.pre.boundary_condition as bc - if TYPE_CHECKING: import matplotlib.axes from shapely import MultiPolygon diff --git a/src/planestress/pre/boundary_condition.py b/src/planestress/pre/boundary_condition.py index ff68fb6..8621484 100644 --- a/src/planestress/pre/boundary_condition.py +++ b/src/planestress/pre/boundary_condition.py @@ -8,14 +8,13 @@ from __future__ import annotations -from typing import TYPE_CHECKING, cast +from typing import TYPE_CHECKING import numpy as np import numpy.typing as npt from planestress.analysis.utils import dof_map - if TYPE_CHECKING: from scipy.sparse import lil_array @@ -245,7 +244,7 @@ def apply_bc( for dof in dofs: # apply bc - TODO - confirm this theory! - k[dof, dof] = cast(float, k[dof, dof]) + self.value + k[dof, dof] = k[dof, dof] + self.value return k, f @@ -483,7 +482,7 @@ def apply_bc( # apply bc - TODO - confirm this theory! for dof in dofs: - k[dof, dof] = cast(float, k[dof, dof]) + self.value + k[dof, dof] = k[dof, dof] + self.value return k, f diff --git a/src/planestress/pre/geometry.py b/src/planestress/pre/geometry.py index b4cbe81..5e6171f 100644 --- a/src/planestress/pre/geometry.py +++ b/src/planestress/pre/geometry.py @@ -12,7 +12,6 @@ from planestress.pre.material import DEFAULT_MATERIAL, Material from planestress.pre.mesh import Mesh - if TYPE_CHECKING: import matplotlib.axes @@ -755,11 +754,11 @@ def __add__( mat_list: list[Material] = [] # loop through each list of polygons and combine - for poly, mat in zip(self.polygons.geoms, self.materials): + for poly, mat in zip(self.polygons.geoms, self.materials, strict=False): poly_list.append(poly) mat_list.append(mat) - for poly, mat in zip(other.polygons.geoms, other.materials): + for poly, mat in zip(other.polygons.geoms, other.materials, strict=False): poly_list.append(poly) mat_list.append(mat) diff --git a/src/planestress/pre/mesh.py b/src/planestress/pre/mesh.py index c526ca5..f5899b7 100644 --- a/src/planestress/pre/mesh.py +++ b/src/planestress/pre/mesh.py @@ -3,7 +3,7 @@ from __future__ import annotations from dataclasses import dataclass, field -from typing import TYPE_CHECKING, Any, cast +from typing import TYPE_CHECKING, Any import gmsh import numpy as np @@ -20,7 +20,6 @@ from planestress.analysis.finite_elements.tri6 import Tri6 from planestress.post.plotting import plotting_context - if TYPE_CHECKING: import matplotlib.axes @@ -313,10 +312,10 @@ def save_mesh( # for each element type for el_type, el_tags, el_node_tags_list in zip( - el_types, el_tags_by_type, el_node_tags_by_type + el_types, el_tags_by_type, el_node_tags_by_type, strict=False ): # get number of elements - num_elements = int(len(el_tags)) + num_elements = len(el_tags) # tri3 elements if el_type == 2: @@ -352,7 +351,9 @@ def save_mesh( ) # loop through each element - for el_tag, el_node_tags in zip(el_tags, el_node_tags_list): + for el_tag, el_node_tags in zip( + el_tags, el_node_tags_list, strict=False + ): # convert gmsh tag to node index node_idxs = np.array(el_node_tags - 1, dtype=np.int32) @@ -386,12 +387,12 @@ def save_mesh( # for each line type for line_type, line_tags, line_node_tags_list in zip( - line_types, line_tags_by_type, line_node_tags_by_type + line_types, line_tags_by_type, line_node_tags_by_type, strict=False ): # linear line elements if line_type == 1: # reshape node tags list - num_lines = int(len(line_tags)) + num_lines = len(line_tags) line_node_tags_list = np.reshape(line_node_tags_list, (num_lines, 2)) # assign element object @@ -399,7 +400,7 @@ def save_mesh( # quadratic line elements elif line_type == 8: # reshape node tags list - num_lines = int(len(line_tags)) + num_lines = len(line_tags) line_node_tags_list = np.reshape(line_node_tags_list, (num_lines, 3)) # assign element object @@ -408,7 +409,9 @@ def save_mesh( raise ValueError(f"Unsupported gmsh line type: type {line_type}.") # loop through each line element - for line_tag, line_node_tags in zip(line_tags, line_node_tags_list): + for line_tag, line_node_tags in zip( + line_tags, line_node_tags_list, strict=False + ): # convert gmsh tag to node index node_idxs = np.array(line_node_tags - 1, dtype=np.int32) coords = self.nodes[node_idxs, :].transpose() @@ -554,7 +557,7 @@ def get_node_idx_by_coordinates( f"node is located at {node}." ) - return cast(int, idx) + return idx def get_tagged_node( self, @@ -597,7 +600,7 @@ def get_tagged_node_by_coordinates( idx = self.tagged_nodes_str_tree.nearest(geometry=shapely.Point(x, y)) # check we are close to the desired tagged node - node = self.tagged_nodes[cast(int, idx)] + node = self.tagged_nodes[idx] if not self.check_nearest_tol(point1=(node.x, node.y), point2=(x, y)): raise ValueError( @@ -605,7 +608,7 @@ def get_tagged_node_by_coordinates( f"nearest tagged node is located at {node}." ) - return self.tagged_nodes[cast(int, idx)] + return self.tagged_nodes[idx] def get_tagged_line( self, @@ -651,9 +654,10 @@ def get_tagged_line_by_coordinates( idx = self.tagged_lines_str_tree.nearest(geometry=mid_point) # check we are close to the desired line - line = self.tagged_lines[cast(int, idx)] - ln_mid = 0.5 * (line.tagged_nodes[0].x + line.tagged_nodes[1].x), 0.5 * ( - line.tagged_nodes[0].y + line.tagged_nodes[1].y + line = self.tagged_lines[idx] + ln_mid = ( + 0.5 * (line.tagged_nodes[0].x + line.tagged_nodes[1].x), + 0.5 * (line.tagged_nodes[0].y + line.tagged_nodes[1].y), ) if not self.check_nearest_tol(point1=ln_mid, point2=(mid_point.x, mid_point.y)): @@ -663,7 +667,7 @@ def get_tagged_line_by_coordinates( f"mid-point that is located at {ln_mid}." ) - return self.tagged_lines[cast(int, idx)] + return self.tagged_lines[idx] def 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type-checking @@ -94,9 +94,9 @@ jobs: - name: Install python using uv run: uv python install - + - name: Install test dependencies - run: uv sync --locked --only-group tests + run: uv sync --locked --only-group test - name: Run pytest run: uv run coverage run --parallel-mode -m pytest -m 'not benchmark_suite' @@ -127,7 +127,7 @@ jobs: run: uv python install - name: Install dependencies - run: uv sync --locked --only-group tests + run: uv sync --locked --only-group docs - name: Install pandoc uses: pandoc/actions/setup@v1 diff --git a/.python-version b/.python-version index 3a4f41e..24ee5b1 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.13 \ No newline at end of file +3.13 From daaa8cdf88943e464f56c3edefa85cf3ebf8f56b Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Sat, 3 May 2025 01:11:30 +1000 Subject: [PATCH 3/7] Add gmsh-nox for tests --- .github/workflows/ci.yml | 32 ++++++++++++++++++++++---------- .readthedocs.yaml | 3 ++- tests/cli/__init__.py | 1 - tests/cli/test_main.py | 28 ---------------------------- 4 files changed, 24 insertions(+), 40 deletions(-) delete mode 100644 tests/cli/__init__.py delete mode 100644 tests/cli/test_main.py diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 69f220a..81739ed 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -36,7 +36,7 @@ jobs: run: uv sync --locked --only-group lint - name: Run pre-commit - run: uv run pre-commit run --all-files --color always --show-diff-on-failure + run: uv run --no-sync pre-commit run --all-files --color always --show-diff-on-failure type-checking: name: type-checking @@ -59,7 +59,7 @@ jobs: run: uv sync --locked --only-group lint - name: Run pyright - run: uv run pyright + run: uv run --no-sync pyright tests: name: ${{ matrix.session }} ${{ matrix.python }} [${{ matrix.os }}] @@ -95,11 +95,20 @@ jobs: - name: Install python using uv run: uv python install - - name: Install test dependencies - run: uv sync --locked --only-group test + - name: Install test dependencies (mac & windows) + if: matrix.os != 'ubuntu-latest' + run: uv sync --locked --no-default-groups --group test + + - name: Install test dependencies (linux) + if: matrix.os == 'ubuntu-latest' + run: uv sync --locked --no-default-groups --group test --no-install-package gmsh + + - name: Install gmsh-nox (linux) + if: matrix.os == 'ubuntu-latest' + run: uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 - name: Run pytest - run: uv run coverage run --parallel-mode -m pytest -m 'not benchmark_suite' + run: uv run --no-sync coverage run --parallel-mode -m pytest -m 'not benchmark_suite' - name: Upload coverage data uses: actions/upload-artifact@v4 @@ -127,13 +136,16 @@ jobs: run: uv python install - name: Install dependencies - run: uv sync --locked --only-group docs + run: uv sync --locked --no-default-groups --group docs --no-install-package gmsh + + - name: Install gmsh-nox + run: uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 - name: Install pandoc uses: pandoc/actions/setup@v1 - name: Build docs - run: uv run sphinx-build --color docs docs/_build + run: uv run --no-sync sphinx-build --color docs docs/_build - name: Upload docs uses: actions/upload-artifact@v4 @@ -169,13 +181,13 @@ jobs: merge-multiple: true - name: Combine coverage data - run: uv run coverage combine + run: uv run --no-sync coverage combine - name: Display coverage report - run: uv run coverage report -i + run: uv run --no-sync coverage report -i - name: Create coverage report - run: uv run coverage xml -i + run: uv run --no-sync coverage xml -i - name: Upload coverage report uses: codecov/codecov-action@v5 diff --git a/.readthedocs.yaml b/.readthedocs.yaml index e938827..92f7625 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -14,7 +14,8 @@ build: create_environment: - uv venv -p 3.13 install: - - uv sync --locked --only-group docs + - uv sync --locked --no-default-groups --group docs --no-install-package gmsh + - uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 build: html: - uv run sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html diff --git a/tests/cli/__init__.py b/tests/cli/__init__.py deleted file mode 100644 index 11f0080..0000000 --- a/tests/cli/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"""CLI tests for planestress.""" diff --git a/tests/cli/test_main.py b/tests/cli/test_main.py deleted file mode 100644 index dc99941..0000000 --- a/tests/cli/test_main.py +++ /dev/null @@ -1,28 +0,0 @@ -"""Test cases for the __main__ module.""" - -from __future__ import annotations - -import pytest -from click.testing import CliRunner - -from planestress import __main__ - - -@pytest.fixture -def runner() -> CliRunner: - """Fixture for invoking command-line interfaces. - - Returns: - CliRunner object - """ - return CliRunner() - - -def test_main_succeeds(runner: CliRunner) -> None: - """It exits with a status code of zero. - - Args: - runner: CliRunner object - """ - result = runner.invoke(__main__.main) - assert result.exit_code == 0 From fac912bf00a6c677c6b1231e7c254a25f6be9104 Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Sat, 3 May 2025 01:12:52 +1000 Subject: [PATCH 4/7] Fix gmsh-nox requirement --- .github/workflows/ci.yml | 4 ++-- .readthedocs.yaml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 81739ed..975de1d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -105,7 +105,7 @@ jobs: - name: Install gmsh-nox (linux) if: matrix.os == 'ubuntu-latest' - run: uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 + run: uv pip install --index https://gmsh.info/python-packages-dev-nox 'gmsh<4.13.2' - name: Run pytest run: uv run --no-sync coverage run --parallel-mode -m pytest -m 'not benchmark_suite' @@ -139,7 +139,7 @@ jobs: run: uv sync --locked --no-default-groups --group docs --no-install-package gmsh - name: Install gmsh-nox - run: uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 + run: uv pip install --index https://gmsh.info/python-packages-dev-nox 'gmsh<4.13.2' - name: Install pandoc uses: pandoc/actions/setup@v1 diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 92f7625..32b3e12 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -15,7 +15,7 @@ build: - uv venv -p 3.13 install: - uv sync --locked --no-default-groups --group docs --no-install-package gmsh - - uv pip install --index https://gmsh.info/python-packages-dev-nox gmsh<4.13.2 + - uv pip install --index https://gmsh.info/python-packages-dev-nox 'gmsh<4.13.2' build: html: - uv run sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html From ef3d1f1d8b05e6f05db340dadcfdda413f136343 Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Sat, 3 May 2025 01:18:52 +1000 Subject: [PATCH 5/7] Fix read the docs build --- .readthedocs.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 32b3e12..e45a73c 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -15,7 +15,7 @@ build: - uv venv -p 3.13 install: - uv sync --locked --no-default-groups --group docs --no-install-package gmsh - - uv pip install --index https://gmsh.info/python-packages-dev-nox 'gmsh<4.13.2' + - uv pip install --index https://gmsh.info/python-packages-dev-nox "gmsh<4.13.2" build: html: - uv run sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html From 88bf3c06086ca31f1feac629945bc7fc985f62c1 Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Sat, 3 May 2025 01:22:03 +1000 Subject: [PATCH 6/7] Fix read the docs build... again --- .readthedocs.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index e45a73c..02b3e4f 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -18,4 +18,4 @@ build: - uv pip install --index https://gmsh.info/python-packages-dev-nox "gmsh<4.13.2" build: html: - - uv run sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html + - uv run --no-sync sphinx-build -T -b html -d docs/_build/doctrees -D language=en docs $READTHEDOCS_OUTPUT/html From 92317b93810e48a7bf7e73c1b579e8cccf6fd834 Mon Sep 17 00:00:00 2001 From: robbievanleeuwen Date: Mon, 5 May 2025 23:22:54 +1000 Subject: [PATCH 7/7] Correct ruff errors --- .../finite_elements/finite_element.py | 14 ++- .../analysis/finite_elements/quad4.py | 37 ++++--- .../analysis/finite_elements/quad8.py | 59 +++++++---- .../analysis/finite_elements/quad9.py | 55 ++++++---- .../analysis/finite_elements/tri3.py | 16 ++- .../analysis/finite_elements/tri6.py | 34 +++--- src/planestress/analysis/plane_stress.py | 12 +-- src/planestress/analysis/solver.py | 11 +- src/planestress/analysis/utils.py | 9 +- src/planestress/post/plotting.py | 11 +- src/planestress/post/results.py | 48 ++++----- src/planestress/pre/analysis_case.py | 5 +- src/planestress/pre/boundary_condition.py | 14 +-- src/planestress/pre/geometry.py | 100 ++++++++---------- src/planestress/pre/library.py | 9 +- src/planestress/pre/material.py | 30 ++++-- src/planestress/pre/mesh.py | 75 ++++++------- tests/conftest.py | 5 +- tests/validation/test_validation_strand7.py | 3 +- 19 files changed, 301 insertions(+), 246 deletions(-) diff --git a/src/planestress/analysis/finite_elements/finite_element.py b/src/planestress/analysis/finite_elements/finite_element.py index 2207e17..665e422 100644 --- a/src/planestress/analysis/finite_elements/finite_element.py +++ b/src/planestress/analysis/finite_elements/finite_element.py @@ -4,12 +4,12 @@ from typing import TYPE_CHECKING -import numpy as np -import numpy.typing as npt - import planestress.analysis.utils as utils if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt + from planestress.post.results import ElementResults from planestress.pre.material import Material @@ -140,3 +140,11 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: NotImplementedError: If this method hasn't been implemented for an element. """ raise NotImplementedError + + def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Quad9 element. + + Returns: + Extrapolation matrix. + """ + raise NotImplementedError diff --git a/src/planestress/analysis/finite_elements/quad4.py b/src/planestress/analysis/finite_elements/quad4.py index 76696f4..b026c71 100644 --- a/src/planestress/analysis/finite_elements/quad4.py +++ b/src/planestress/analysis/finite_elements/quad4.py @@ -130,15 +130,13 @@ def b_matrix_jacobian( # calculate the jacobian jacobian = np.linalg.det(j) - # if the area of the element is not zero - if jacobian != 0: - b_mat = np.linalg.solve(j, b_iso) - else: - b_mat = np.zeros((2, 4)) # empty b matrix + # if the area of the element is not zero set jacobian, otherwise empty b matrix + b_mat = np.linalg.solve(j, b_iso) if jacobian != 0 else np.zeros((2, 4)) # check sign of jacobian if jacobian < 0: - raise RuntimeError("Jacobian of element is less than zero.") + msg = "Jacobian of element is less than zero." + raise RuntimeError(msg) # form plane stress b matrix b_mat_ps = np.zeros((3, 8)) @@ -287,21 +285,13 @@ def calculate_element_stresses( sigs=sigs, ) - @cache def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: """Returns the extrapolation matrix for a Quad4 element. Returns: Extrapolation matrix. """ - return np.array( - [ - [1.0 + 0.5 * np.sqrt(3), -0.5, 1.0 - 0.5 * np.sqrt(3), -0.5], - [-0.5, 1.0 + 0.5 * np.sqrt(3), -0.5, 1.0 - 0.5 * np.sqrt(3)], - [1.0 - 0.5 * np.sqrt(3), -0.5, 1.0 + 0.5 * np.sqrt(3), -0.5], - [-0.5, 1.0 - 0.5 * np.sqrt(3), -0.5, 1.0 + 0.5 * np.sqrt(3)], - ] - ) + return quad4_extrapolate_gp_to_nodes() def get_polygon_coordinates(self) -> tuple[list[int], npt.NDArray[np.float64]]: """Returns a list of coordinates and indexes that define the element exterior. @@ -321,3 +311,20 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: (self.node_idxs[0], self.node_idxs[1], self.node_idxs[2]), (self.node_idxs[0], self.node_idxs[2], self.node_idxs[3]), ] + + +@cache +def quad4_extrapolate_gp_to_nodes() -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Quad4 element. + + Returns: + Extrapolation matrix. + """ + return np.array( + [ + [1.0 + 0.5 * np.sqrt(3), -0.5, 1.0 - 0.5 * np.sqrt(3), -0.5], + [-0.5, 1.0 + 0.5 * np.sqrt(3), -0.5, 1.0 - 0.5 * np.sqrt(3)], + [1.0 - 0.5 * np.sqrt(3), -0.5, 1.0 + 0.5 * np.sqrt(3), -0.5], + [-0.5, 1.0 - 0.5 * np.sqrt(3), -0.5, 1.0 + 0.5 * np.sqrt(3)], + ] + ) diff --git a/src/planestress/analysis/finite_elements/quad8.py b/src/planestress/analysis/finite_elements/quad8.py index 5817a09..b882dc7 100644 --- a/src/planestress/analysis/finite_elements/quad8.py +++ b/src/planestress/analysis/finite_elements/quad8.py @@ -165,15 +165,13 @@ def b_matrix_jacobian( # calculate the jacobian jacobian = np.linalg.det(j) - # if the area of the element is not zero - if jacobian != 0: - b_mat = np.linalg.solve(j, b_iso) - else: - b_mat = np.zeros((2, 8)) # empty b matrix + # if the area of the element is not zero set jacobian, otherwise empty b matrix + b_mat = np.linalg.solve(j, b_iso) if jacobian != 0 else np.zeros((2, 8)) # check sign of jacobian if jacobian < 0: - raise RuntimeError("Jacobian of element is less than zero.") + msg = "Jacobian of element is less than zero." + raise RuntimeError(msg) # form plane stress b matrix b_mat_ps = np.zeros((3, 16)) @@ -322,31 +320,18 @@ def calculate_element_stresses( sigs=sigs, ) - @cache def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: """Returns the extrapolation matrix for a Quad8 element. Returns: Extrapolation matrix. """ - # get isoparametric coordinates of gauss element at acutal element nodes - gauss_iso_coords = ( - np.array(self.nodal_isoparametric_coordinates()) * np.sqrt(15.0) / 3.0 + return quad8_extrapolate_gp_to_nodes( + isoparam_coords=tuple(self.nodal_isoparametric_coordinates()), + num_nodes=self.num_nodes, + int_points=self.int_points, ) - # initialise extrapolation matrix - ex_mat = np.zeros((self.num_nodes, self.int_points**2)) - - # build extrapolation matrix - for idx, gic in enumerate(gauss_iso_coords): - iso_coords = gic[0], gic[1] # create iso_coords tuple - - # evaluate shape function at guassian element iso coords - # note shape functions of the gaussian element are for a Quad9 element - ex_mat[idx, :] = Quad9.shape_functions(iso_coords=iso_coords) - - return ex_mat - def get_polygon_coordinates(self) -> tuple[list[int], npt.NDArray[np.float64]]: """Returns a list of coordinates and indexes that define the element exterior. @@ -369,3 +354,31 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: (self.node_idxs[6], self.node_idxs[3], self.node_idxs[7]), (self.node_idxs[7], self.node_idxs[5], self.node_idxs[6]), ] + + +@cache +def quad8_extrapolate_gp_to_nodes( + isoparam_coords: tuple[tuple[float, float], ...], + num_nodes: int, + int_points: int, +) -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Quad8 element. + + Returns: + Extrapolation matrix. + """ + # get isoparametric coordinates of gauss element at acutal element nodes + gauss_iso_coords = np.array(isoparam_coords) * np.sqrt(15.0) / 3.0 + + # initialise extrapolation matrix + ex_mat = np.zeros((num_nodes, int_points**2)) + + # build extrapolation matrix + for idx, gic in enumerate(gauss_iso_coords): + iso_coords = gic[0], gic[1] # create iso_coords tuple + + # evaluate shape function at guassian element iso coords + # note shape functions of the gaussian element are for a Quad9 element + ex_mat[idx, :] = Quad9.shape_functions(iso_coords=iso_coords) + + return ex_mat diff --git a/src/planestress/analysis/finite_elements/quad9.py b/src/planestress/analysis/finite_elements/quad9.py index ba19c84..90cfb90 100644 --- a/src/planestress/analysis/finite_elements/quad9.py +++ b/src/planestress/analysis/finite_elements/quad9.py @@ -169,15 +169,13 @@ def b_matrix_jacobian( # calculate the jacobian jacobian = np.linalg.det(j) - # if the area of the element is not zero - if jacobian != 0: - b_mat = np.linalg.solve(j, b_iso) - else: - b_mat = np.zeros((2, 9)) # empty b matrix + # if the area of the element is not zero set jacobian, otherwise empty b matrix + b_mat = np.linalg.solve(j, b_iso) if jacobian != 0 else np.zeros((2, 9)) # check sign of jacobian if jacobian < 0: - raise RuntimeError("Jacobian of element is less than zero.") + msg = "Jacobian of element is less than zero." + raise RuntimeError(msg) # form plane stress b matrix b_mat_ps = np.zeros((3, 18)) @@ -326,30 +324,17 @@ def calculate_element_stresses( sigs=sigs, ) - @cache def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: """Returns the extrapolation matrix for a Quad9 element. Returns: Extrapolation matrix. """ - # get isoparametric coordinates of gauss element at acutal element nodes - gauss_iso_coords = ( - np.array(self.nodal_isoparametric_coordinates()) * np.sqrt(15.0) / 3.0 + return quad9_extrapolate_gp_to_nodes( + isoparam_coords=tuple(self.nodal_isoparametric_coordinates()), + num_nodes=self.num_nodes, ) - # initialise extrapolation matrix - ex_mat = np.zeros((self.num_nodes, self.num_nodes)) - - # build extrapolation matrix - for idx, gic in enumerate(gauss_iso_coords): - iso_coords = gic[0], gic[1] # create iso_coords tuple - - # evaluate shape function at guassian element iso coords - ex_mat[idx, :] = self.shape_functions(iso_coords=iso_coords) - - return ex_mat - def get_polygon_coordinates(self) -> tuple[list[int], npt.NDArray[np.float64]]: """Returns a list of coordinates and indexes that define the element exterior. @@ -374,3 +359,29 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: (self.node_idxs[3], self.node_idxs[7], self.node_idxs[8]), (self.node_idxs[7], self.node_idxs[0], self.node_idxs[8]), ] + + +@cache +def quad9_extrapolate_gp_to_nodes( + isoparam_coords: tuple[tuple[float, float], ...], + num_nodes: int, +) -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Quad9 element. + + Returns: + Extrapolation matrix. + """ + # get isoparametric coordinates of gauss element at acutal element nodes + gauss_iso_coords = np.array(isoparam_coords) * np.sqrt(15.0) / 3.0 + + # initialise extrapolation matrix + ex_mat = np.zeros((num_nodes, num_nodes)) + + # build extrapolation matrix + for idx, gic in enumerate(gauss_iso_coords): + iso_coords = gic[0], gic[1] # create iso_coords tuple + + # evaluate shape function at guassian element iso coords + ex_mat[idx, :] = Quad9.shape_functions(iso_coords=iso_coords) + + return ex_mat diff --git a/src/planestress/analysis/finite_elements/tri3.py b/src/planestress/analysis/finite_elements/tri3.py index e264bc1..a015feb 100644 --- a/src/planestress/analysis/finite_elements/tri3.py +++ b/src/planestress/analysis/finite_elements/tri3.py @@ -122,7 +122,8 @@ def b_matrix_jacobian( # check sign of jacobian if jacobian < 0: - raise RuntimeError("Jacobian of element is less than zero.") + msg = "Jacobian of element is less than zero." + raise RuntimeError(msg) # form plane stress b matrix b_mat_ps = np.zeros((3, 6), dtype=np.float64) @@ -261,14 +262,13 @@ def calculate_element_stresses( sigs=sigs, ) - @cache def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: """Returns the extrapolation matrix for a Tri3 element. Returns: Extrapolation matrix. """ - return np.array([[1.0], [1.0], [1.0]]) + return tri3_extrapolate_gp_to_nodes() def get_polygon_coordinates(self) -> tuple[list[int], npt.NDArray[np.float64]]: """Returns a list of coordinates and indexes that define the element exterior. @@ -285,3 +285,13 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: List of triangle indexes. """ return [(self.node_idxs[0], self.node_idxs[1], self.node_idxs[2])] + + +@cache +def tri3_extrapolate_gp_to_nodes() -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Tri3 element. + + Returns: + Extrapolation matrix. + """ + return np.array([[1.0], [1.0], [1.0]]) diff --git a/src/planestress/analysis/finite_elements/tri6.py b/src/planestress/analysis/finite_elements/tri6.py index b266df1..bc6e60b 100644 --- a/src/planestress/analysis/finite_elements/tri6.py +++ b/src/planestress/analysis/finite_elements/tri6.py @@ -140,7 +140,8 @@ def b_matrix_jacobian( # check sign of jacobian if jacobian < 0: - raise RuntimeError("Jacobian of element is less than zero.") + msg = "Jacobian of element is less than zero." + raise RuntimeError(msg) # form plane stress b matrix b_mat_ps = np.zeros((3, 12)) @@ -289,23 +290,13 @@ def calculate_element_stresses( sigs=sigs, ) - @cache def extrapolate_gauss_points_to_nodes(self) -> npt.NDArray[np.float64]: """Returns the extrapolation matrix for a Tri6 element. Returns: Extrapolation matrix. """ - return np.array( - [ - [5.0 / 3.0, -1.0 / 3.0, -1.0 / 3.0], - [-1.0 / 3.0, 5.0 / 3.0, -1.0 / 3.0], - [-1.0 / 3.0, -1.0 / 3.0, 5.0 / 3.0], - [2.0 / 3.0, 2.0 / 3.0, -1.0 / 3.0], - [-1.0 / 3.0, 2.0 / 3.0, 2.0 / 3.0], - [2.0 / 3.0, -1.0 / 3.0, 2.0 / 3.0], - ] - ) + return tri6_extrapolate_gp_to_nodes() def get_polygon_coordinates(self) -> tuple[list[int], npt.NDArray[np.float64]]: """Returns a list of coordinates and indexes that define the element exterior. @@ -327,3 +318,22 @@ def get_triangulation(self) -> list[tuple[int, int, int]]: (self.node_idxs[3], self.node_idxs[4], self.node_idxs[5]), (self.node_idxs[5], self.node_idxs[4], self.node_idxs[2]), ] + + +@cache +def tri6_extrapolate_gp_to_nodes() -> npt.NDArray[np.float64]: + """Returns the extrapolation matrix for a Tri6 element. + + Returns: + Extrapolation matrix. + """ + return np.array( + [ + [5.0 / 3.0, -1.0 / 3.0, -1.0 / 3.0], + [-1.0 / 3.0, 5.0 / 3.0, -1.0 / 3.0], + [-1.0 / 3.0, -1.0 / 3.0, 5.0 / 3.0], + [2.0 / 3.0, 2.0 / 3.0, -1.0 / 3.0], + [-1.0 / 3.0, 2.0 / 3.0, 2.0 / 3.0], + [2.0 / 3.0, -1.0 / 3.0, 2.0 / 3.0], + ] + ) diff --git a/src/planestress/analysis/plane_stress.py b/src/planestress/analysis/plane_stress.py index 3e57d72..90ff5b4 100644 --- a/src/planestress/analysis/plane_stress.py +++ b/src/planestress/analysis/plane_stress.py @@ -46,10 +46,9 @@ def __init__( # check mesh has been created if len(self.geometry.mesh.nodes) < 1: - raise RuntimeError( - "No mesh detected, run Geometry.create_mesh() before creating a " - "PlaneStress object." - ) + msg = "No mesh detected, run Geometry.create_mesh() before creating a " + msg += "PlaneStress object." + raise RuntimeError(msg) self.mesh: Mesh = self.geometry.mesh @@ -143,9 +142,8 @@ def solve( elif solver_type == "pardiso": u = solver.solve_pardiso(k=k_mod, f=f) else: - raise ValueError( - f"'solver_type' must be 'direct' or 'pardiso', not {solver_type}." - ) + msg = f"'solver_type' must be 'direct' or 'pardiso', not {solver_type}." + raise ValueError(msg) # post-processing res = Results(plane_stress=self, u=u) diff --git a/src/planestress/analysis/solver.py b/src/planestress/analysis/solver.py index 1855643..e7a16a1 100644 --- a/src/planestress/analysis/solver.py +++ b/src/planestress/analysis/solver.py @@ -4,8 +4,6 @@ from typing import TYPE_CHECKING -import numpy as np -import numpy.typing as npt from scipy.sparse import csc_matrix from scipy.sparse.linalg import spsolve @@ -18,6 +16,8 @@ if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt from scipy.sparse import lil_array @@ -62,7 +62,6 @@ def solve_pardiso( return pardiso_solve(A=k_csc, b=f) else: - raise RuntimeError( - "pypardiso not installed, install using the pardiso option, 'pip install " - "planestress[pardiso]'." - ) + msg = "pypardiso not installed, install using the pardiso option, 'pip install " + msg += "planestress[pardiso]'." + raise RuntimeError(msg) diff --git a/src/planestress/analysis/utils.py b/src/planestress/analysis/utils.py index 18aa1f8..b081306 100644 --- a/src/planestress/analysis/utils.py +++ b/src/planestress/analysis/utils.py @@ -58,7 +58,8 @@ def gauss_points_line(n_points: int) -> list[tuple[float, float]]: (5.0 / 9.0, np.sqrt(3.0 / 5.0)), ] - raise ValueError("'n_points' must be 1, 2 or 3.") + msg = "'n_points' must be 1, 2 or 3." + raise ValueError(msg) @cache @@ -87,7 +88,8 @@ def gauss_points_triangle(n_points: int) -> list[tuple[float, float, float, floa (1.0 / 3, 1.0 / 6, 1.0 / 6, 2.0 / 3), ] - raise ValueError("'n_points' must be 1 or 3.") + msg = "'n_points' must be 1 or 3." + raise ValueError(msg) @cache @@ -131,4 +133,5 @@ def gauss_points_quad(n_points: int) -> list[tuple[float, float, float]]: (64.0 / 81.0, 0.0, 0.0), ] - raise ValueError("'n_points' must be 1, 2 or 3.") + msg = "'n_points' must be 1, 2 or 3." + raise ValueError(msg) diff --git a/src/planestress/post/plotting.py b/src/planestress/post/plotting.py index 11aeb0a..5568897 100644 --- a/src/planestress/post/plotting.py +++ b/src/planestress/post/plotting.py @@ -3,7 +3,6 @@ from __future__ import annotations import contextlib -from collections.abc import Generator from typing import TYPE_CHECKING, Any import matplotlib.pyplot as plt @@ -12,6 +11,8 @@ from matplotlib.patches import Polygon if TYPE_CHECKING: + from collections.abc import Generator + import matplotlib.axes import matplotlib.figure @@ -74,13 +75,11 @@ def plotting_context( except (AttributeError, TypeError): pass # only 1 axis, not an array except IndexError as exc: - raise ValueError( - f"axis_index={axis_index} is not compatible with arguments to " - f"subplots: {kwargs}." - ) from exc + msg = f"axis_index={axis_index} is not compatible with arguments to " + msg += f"subplots: {kwargs}." + raise ValueError(msg) from exc else: fig = ax.get_figure() - assert fig ax_supplied = True if not render: diff --git a/src/planestress/post/results.py b/src/planestress/post/results.py index 2c9a1c6..f706c87 100644 --- a/src/planestress/post/results.py +++ b/src/planestress/post/results.py @@ -2,11 +2,11 @@ from __future__ import annotations -from collections.abc import Callable from dataclasses import dataclass, field from typing import TYPE_CHECKING, Any -import matplotlib +import matplotlib as mpl +import matplotlib.axes import numpy as np import numpy.typing as npt from matplotlib.colors import CenteredNorm @@ -17,7 +17,8 @@ from planestress.post.plotting import plotting_context if TYPE_CHECKING: - import matplotlib.axes + from collections.abc import Callable + from scipy.sparse import csc_array from planestress.analysis.finite_elements.finite_element import FiniteElement @@ -254,7 +255,7 @@ def plot_displacement_contour( self, direction: str, **kwargs: Any, - ) -> matplotlib.axes.Axes: + ) -> mpl.axes.Axes: r"""Plots the displacement contours. Args: @@ -311,14 +312,13 @@ def plot_displacement_contour( elif direction == "xy": u = self.uxy else: - raise ValueError(f"'direction' must be 'x', 'y' or 'xy', not {direction}.") + msg = f"'direction' must be 'x', 'y' or 'xy', not {direction}." + raise ValueError(msg) # create plot and setup the plot with plotting_context(title=title, **kwargs) as (fig, ax): - assert ax - # set up the colormap - cmap = matplotlib.colormaps.get_cmap(cmap=colormap) + cmap = mpl.colormaps.get_cmap(cmap=colormap) # create triangulation triang = Triangulation( @@ -339,10 +339,7 @@ def plot_displacement_contour( else: ticks = v - if normalize: - norm = CenteredNorm() - else: - norm = None + norm = CenteredNorm() if normalize else None # plot the filled contours trictr = ax.tricontourf(triang, u, v, cmap=cmap, norm=norm) @@ -547,20 +544,17 @@ def plot_stress( else: sigs = stress_func(agg_func)[:, stress_idx] except KeyError as exc: - raise ValueError( - f"{stress} is not a valid value for 'stress'. Refer to the " - f"documentation for acceptable values." - ) from exc + msg = f"{stress} is not a valid value for 'stress'. Refer to the " + msg += "documentation for acceptable values." + raise ValueError(msg) from exc # get title (ensure stress is valid first!) title: str = kwargs.pop("title", str(stress_dict[stress]["title"])) # create plot and setup the plot with plotting_context(title=title, **kwargs) as (fig, ax): - assert ax - # set up the colormap - cmap = matplotlib.colormaps.get_cmap(cmap=colormap) + cmap = mpl.colormaps.get_cmap(cmap=colormap) # create triangulation triang = Triangulation( @@ -585,10 +579,7 @@ def plot_stress( else: ticks = v - if normalize: - norm = CenteredNorm() - else: - norm = None + norm = CenteredNorm() if normalize else None # plot the filled contours trictr = ax.tricontourf(triang, sigs, v, cmap=cmap, norm=norm) @@ -628,7 +619,7 @@ def plot_principal_stress_vectors( self, stress: str, **kwargs: Any, - ) -> matplotlib.axes.Axes: + ) -> mpl.axes.Axes: r"""Generates a vector plot of the principal stresses. Args: @@ -684,10 +675,9 @@ def plot_principal_stress_vectors( try: title: str = kwargs.pop("title", str(title_dict[stress])) except KeyError as exc: - raise ValueError( - f"{stress} is not a valid value for 'stress'. Refer to the " - f"documentation for acceptable values." - ) from exc + msg = f"{stress} is not a valid value for 'stress'. Refer to the " + msg += "documentation for acceptable values." + raise ValueError(msg) from exc colormap: str = kwargs.pop("colormap", "coolwarm") stress_limits: tuple[float, float] | None = kwargs.pop("stress_limits", None) @@ -725,8 +715,6 @@ def plot_principal_stress_vectors( # create plot and setup the plot with plotting_context(title=title, **kwargs) as (fig, ax): - assert ax - # set up the colormap cmap = matplotlib.colormaps.get_cmap(cmap=colormap) diff --git a/src/planestress/pre/analysis_case.py b/src/planestress/pre/analysis_case.py index 4e0a794..377b6c3 100644 --- a/src/planestress/pre/analysis_case.py +++ b/src/planestress/pre/analysis_case.py @@ -68,9 +68,8 @@ def assign_mesh_tags( point2=boundary_condition.point2, ) else: - raise ValueError( - f"{boundary_condition} is not a valid boundary condition." - ) + msg = f"{boundary_condition} is not a valid boundary condition." + raise ValueError(msg) def plot( self, diff --git a/src/planestress/pre/boundary_condition.py b/src/planestress/pre/boundary_condition.py index 8621484..7a279be 100644 --- a/src/planestress/pre/boundary_condition.py +++ b/src/planestress/pre/boundary_condition.py @@ -10,12 +10,11 @@ from typing import TYPE_CHECKING -import numpy as np -import numpy.typing as npt - from planestress.analysis.utils import dof_map if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt from scipy.sparse import lil_array from planestress.pre.mesh import TaggedEntity, TaggedLine, TaggedNode @@ -136,7 +135,8 @@ def get_node_dofs(self) -> list[int]: List (length 2) of degrees of freedom. """ if self.mesh_tag is None: - raise RuntimeError("Mesh tag is not assigned.") + msg = "Mesh tag is not assigned." + raise RuntimeError(msg) return dof_map(node_idxs=(self.mesh_tag.node_idx,)) @@ -354,7 +354,8 @@ def get_unique_nodes(self) -> list[int]: List of unique node indexes along the line. """ if self.mesh_tag is None: - raise RuntimeError("Mesh tag is not assigned.") + msg = "Mesh tag is not assigned." + raise RuntimeError(msg) # get list of node indexes along line BC node_idxs = [] @@ -535,7 +536,8 @@ def apply_bc( Modified stiffness matrix and load vector (``k``, ``f``). """ if self.mesh_tag is None: - raise RuntimeError("Mesh tag is not assigned.") + msg = "Mesh tag is not assigned." + raise RuntimeError(msg) # loop through all line elements for element in self.mesh_tag.elements: diff --git a/src/planestress/pre/geometry.py b/src/planestress/pre/geometry.py index 5e6171f..0f5ee5d 100644 --- a/src/planestress/pre/geometry.py +++ b/src/planestress/pre/geometry.py @@ -68,10 +68,9 @@ def __init__( # check materials length if len(polygons.geoms) != len(materials): - raise ValueError( - f"Length of materials: {len(materials)}, must equal number of polygons:" - f"{len(polygons.geoms)}." - ) + msg = f"Length of materials: {len(materials)}, must equal number of " + msg += f"polygons: {len(polygons.geoms)}." + raise ValueError(msg) # save input data self.polygons = polygons @@ -273,12 +272,9 @@ def create_facet_list( # create facets for idx, pt in enumerate(pt_list): pt1 = pt - # if we are not at the end of the list - if idx + 1 != len(pt_list): - pt2 = pt_list[idx + 1] + # if we are not at the end of the list, iterate... # otherwise loop back to starting point - else: - pt2 = pt_list[0] + pt2 = pt_list[idx + 1] if idx + 1 != len(pt_list) else pt_list[0] # create new facet new_facet = Facet(pt1=pt1, pt2=pt2) @@ -324,7 +320,8 @@ def embed_point( poly_idx = idx break else: - raise ValueError(f"Point ({x}, {y}) does not lie within any polygons.") + msg = f"Point ({x}, {y}) does not lie within any polygons." + raise ValueError(msg) # create point object and assign poly idx point = Point(x=x, y=y, tol=self.tol, mesh_size=mesh_size) @@ -372,13 +369,13 @@ def embed_line( poly_idxs.append(idx) break else: - raise ValueError(f"Point ({pt}) does not lie within any polygons.") + msg = f"Point ({pt}) does not lie within any polygons." + raise ValueError(msg) if poly_idxs[0] != poly_idxs[1]: - raise ValueError( - f"Point 1 ({pts[0]}) lies within a different polygon to point 2 " - f"({pts[1]})" - ) + msg = f"Point 1 ({pts[0]}) lies within a different polygon to point 2 " + msg += f"({pts[1]})" + raise ValueError(msg) # create point and facet objects and assign poly idx (note poly) pt1 = Point(x=point1[0], y=point1[1], tol=self.tol, mesh_size=mesh_size) @@ -486,11 +483,7 @@ def align_to( offset = align_to_coord - self_align_coord # shift geometry - if on in ["top", "bottom"]: - arg = "y" - else: - arg = "x" - + arg = "y" if on in ["top", "bottom"] else "x" kwargs = {arg: offset} return self.shift_geometry(**kwargs) @@ -535,10 +528,9 @@ def align_center( shift_x = round(point_x - cx, self.tol) shift_y = round(point_y - cy, self.tol) except (TypeError, ValueError) as exc: - raise ValueError( - f"align_to must be either a Geometry object or an (x, y) " - f"coordinate, not {align_to}." - ) from exc + msg = "align_to must be either a Geometry object or an (x, y) " + msg += f"coordinate, not {align_to}." + raise ValueError(msg) from exc return self.shift_geometry(x=shift_x, y=shift_y) @@ -630,7 +622,8 @@ def mirror_geometry( xfact = -1.0 yfact = 1.0 else: - raise ValueError(f"axis must be 'x' or 'y', not {axis}.") + msg = f"axis must be 'x' or 'y', not {axis}." + raise ValueError(msg) return Geometry( polygons=affinity.scale( @@ -678,9 +671,8 @@ def __or__( tol=tol, ) except Exception as exc: - raise ValueError( - f"Cannot perform union on these two objects: {self} | {other}" - ) from exc + msg = f"Cannot perform union on these two objects: {self} | {other}" + raise ValueError(msg) from exc def __sub__( self, @@ -708,6 +700,8 @@ def __sub__( Example: TODO. Use brackets to show order of operations important! """ + msg = f"Cannot perform difference on these two objects: {self} - {other}" + try: new_polygon = self.filter_non_polygons( input_geom=self.polygons - other.polygons @@ -715,22 +709,16 @@ def __sub__( # non-polygon results if isinstance(new_polygon, shapely.GeometryCollection): - raise ValueError( - f"Cannot perform difference on these two objects: {self} - {other}" - ) + raise ValueError(msg) # polygon or multipolygon object - elif isinstance(new_polygon, (shapely.Polygon, shapely.MultiPolygon)): + elif isinstance(new_polygon, shapely.Polygon | shapely.MultiPolygon): return Geometry( polygons=new_polygon, materials=self.materials, tol=self.tol ) else: - raise ValueError( - f"Cannot perform difference on these two objects: {self} - {other}" - ) + raise ValueError(msg) except Exception as exc: - raise ValueError( - f"Cannot perform difference on these two objects: {self} - {other}" - ) from exc + raise ValueError(msg) from exc def __add__( self, @@ -808,10 +796,9 @@ def __and__( tol=tol, ) except Exception as exc: - raise ValueError( - f"Cannot perform intersection on these two Geometry instances: " - f"{self} & {other}" - ) from exc + msg = "Cannot perform intersection on these two Geometry instances: " + msg += f"{self} & {other}" + raise ValueError(msg) from exc @staticmethod def filter_non_polygons( @@ -833,14 +820,16 @@ def filter_non_polygons( Returns: Filtered polygon """ - if isinstance(input_geom, (shapely.Polygon, shapely.MultiPolygon)): + if isinstance(input_geom, shapely.Polygon | shapely.MultiPolygon): return input_geom elif isinstance(input_geom, shapely.GeometryCollection): acc = [] - for item in input_geom.geoms: - if isinstance(item, (shapely.Polygon, shapely.MultiPolygon)): - acc.append(item) + acc = [ + item + for item in input_geom.geoms + if isinstance(item, shapely.Polygon | shapely.MultiPolygon) + ] if len(acc) == 0: return shapely.Polygon() @@ -848,7 +837,7 @@ def filter_non_polygons( return acc[0] else: return shapely.MultiPolygon(polygons=acc) - elif isinstance(input_geom, (shapely.Point, shapely.LineString)): + elif isinstance(input_geom, shapely.Point | shapely.LineString): return shapely.Polygon() else: return shapely.Polygon() @@ -896,7 +885,7 @@ def create_mesh( TODO - information about subdivision algorithm. """ # convert mesh_size to an appropriately sized list - if isinstance(mesh_sizes, (float, int)): + if isinstance(mesh_sizes, float | int): mesh_sizes = [float(mesh_sizes)] * len(self.surfaces) if len(mesh_sizes) == 1: @@ -904,9 +893,8 @@ def create_mesh( # check mesh_sizes length if len(mesh_sizes) != len(self.surfaces): - raise ValueError( - "Length of 'mesh_sizes' must equal the number of polygons or 1." - ) + msg = "Length of 'mesh_sizes' must equal the number of polygons or 1." + raise ValueError(msg) self.mesh.create_mesh( points=self.points, @@ -976,7 +964,6 @@ def plot_geometry( # create plot and setup the plot with plotting_context(title=title, **kwargs) as (_, ax): - assert ax label: str | None # plot the points and facets @@ -1084,7 +1071,8 @@ def plot_mesh( **kwargs, ) else: - raise RuntimeError("Generate a mesh with create_mesh() prior to plotting.") + msg = "Generate a mesh with create_mesh() prior to plotting." + raise RuntimeError(msg) @dataclass(eq=True) @@ -1218,10 +1206,12 @@ def to_tuple(self) -> tuple[float, float]: idx_2 = self.pt2.idx if idx_1 is None: - raise RuntimeError(f"Point 1: {self.pt1} has not been assigned an index.") + msg = f"Point 1: {self.pt1} has not been assigned an index." + raise RuntimeError(msg) if idx_2 is None: - raise RuntimeError(f"Point 2: {self.pt2} has not been assigned an index.") + msg = f"Point 2: {self.pt2} has not been assigned an index." + raise RuntimeError(msg) return idx_1, idx_2 diff --git a/src/planestress/pre/library.py b/src/planestress/pre/library.py index 29adece..6eceece 100644 --- a/src/planestress/pre/library.py +++ b/src/planestress/pre/library.py @@ -125,7 +125,8 @@ def gravity( try: return gravity_units[units] except KeyError as exc: - raise ValueError(f"{units} is not a valid input for 'units'.") from exc + msg = f"{units} is not a valid input for 'units'." + raise ValueError(msg) from exc def steel_material( @@ -191,7 +192,8 @@ def steel_material( color=color, ) except KeyError as exc: - raise ValueError(f"{units} is not a valid input for 'units'.") from exc + msg = f"{units} is not a valid input for 'units'." + raise ValueError(msg) from exc def concrete_material( @@ -255,4 +257,5 @@ def concrete_material( color=color, ) except KeyError as exc: - raise ValueError(f"{units} is not a valid input for 'units'.") from exc + msg = f"{units} is not a valid input for 'units'." + raise ValueError(msg) from exc diff --git a/src/planestress/pre/material.py b/src/planestress/pre/material.py index 9310517..a1a2398 100644 --- a/src/planestress/pre/material.py +++ b/src/planestress/pre/material.py @@ -55,28 +55,36 @@ def lda(self) -> float: / ((1 + self.poissons_ratio) * (1 - 2 * self.poissons_ratio)) ) - @cache def get_d_matrix(self) -> npt.NDArray[np.float64]: r"""Returns the constitutive matrix for plane-stress. The constitutive matrix (D) is defined as :math:`\boldsymbol{\sigma} = \textbf{D} \boldsymbol{\varepsilon}`. - TODO - consider caching the result. - Returns: Constitutive matrix. """ - mu = self.mu - lda = self.lda + return d_matrix(mu=self.mu, lda=self.lda) + + +@cache +def d_matrix( + mu: float, + lda: float, +) -> npt.NDArray[np.float64]: + """Returns the constitutive matrix for plane-stress. - d_mat = np.zeros((3, 3)) # allocate D matrix - d_mat[0:2, 0:2] = lda + 2 * mu - d_mat[2, 2] = mu - d_mat[0, 1] = lda - d_mat[1, 0] = lda + Args: + mu: Lamé parameter mu + lda: Lamé parameter lambda + """ + d_mat = np.zeros((3, 3)) # allocate D matrix + d_mat[0:2, 0:2] = lda + 2 * mu + d_mat[2, 2] = mu + d_mat[0, 1] = lda + d_mat[1, 0] = lda - return d_mat + return d_mat DEFAULT_MATERIAL = Material() diff --git a/src/planestress/pre/mesh.py b/src/planestress/pre/mesh.py index f5899b7..23ec1d2 100644 --- a/src/planestress/pre/mesh.py +++ b/src/planestress/pre/mesh.py @@ -343,7 +343,8 @@ def save_mesh( el_obj = Quad8 num_nodes = 8 else: - raise ValueError(f"Unsupported gmsh element type: type {el_type}.") + msg = f"Unsupported gmsh element type: type {el_type}." + raise ValueError(msg) # reshape node tags list el_node_tags_list = np.reshape( @@ -406,7 +407,8 @@ def save_mesh( # assign element object line_obj = QuadraticLine else: - raise ValueError(f"Unsupported gmsh line type: type {line_type}.") + msg = f"Unsupported gmsh line type: type {line_type}." + raise ValueError(msg) # loop through each line element for line_tag, line_node_tags in zip( @@ -458,18 +460,21 @@ def save_mesh( _, node_tags = gmsh.model.get_adjacencies(dim=1, tag=tag) # build list of tagged nodes - tagged_nodes = [] - for node_tag in node_tags: - tagged_nodes.append(self.get_tagged_node(tag=node_tag)) + tagged_nodes = [ + self.get_tagged_node(tag=node_tag) for node_tag in node_tags + ] # get element tags of line elements along the line _, line_tags_by_type, _ = gmsh.model.mesh.get_elements(dim=1, tag=tag) # build list of line elements - line_list = [] - for line_tags in line_tags_by_type: - for line_tag in line_tags: - line_list.append(self.get_line_element_by_tag(tag=line_tag)) + line_tags_by_type: list[list[int]] # rvl - to check + + line_list = [ + self.get_line_element_by_tag(tag=line_tag) + for line_tags in line_tags_by_type + for line_tag in line_tags + ] # add to list of tagged lines self.tagged_lines.append( @@ -523,10 +528,9 @@ def check_nearest_tol( y = self.bbox[4] - self.bbox[1] tol = 0.01 * min(x, y) - if abs(point1[0] - point2[0]) > tol or abs(point1[1] - point2[1]) > tol: - return False - else: - return True + return not ( + abs(point1[0] - point2[0]) > tol or abs(point1[1] - point2[1]) > tol + ) def get_node_idx_by_coordinates( self, @@ -552,10 +556,9 @@ def get_node_idx_by_coordinates( node = self.nodes[idx] if not self.check_nearest_tol(point1=(node[0], node[1]), point2=(x, y)): - raise ValueError( - f"The point ({x}, {y}) is not close to a node in the mesh. The nearest " - f"node is located at {node}." - ) + msg = f"The point ({x}, {y}) is not close to a node in the mesh. The " + msg += f"nearest node is located at {node}." + raise ValueError(msg) return idx @@ -578,7 +581,8 @@ def get_tagged_node( if tg.tag == tag: return tg else: - raise ValueError(f"Cannot find TaggedNode with tag {tag}.") + msg = f"Cannot find TaggedNode with tag {tag}." + raise ValueError(msg) def get_tagged_node_by_coordinates( self, @@ -603,10 +607,9 @@ def get_tagged_node_by_coordinates( node = self.tagged_nodes[idx] if not self.check_nearest_tol(point1=(node.x, node.y), point2=(x, y)): - raise ValueError( - f"The point ({x}, {y}) is not close to a tagged node in the mesh. The " - f"nearest tagged node is located at {node}." - ) + msg = f"The point ({x}, {y}) is not close to a tagged node in the mesh. " + msg += f"The nearest tagged node is located at {node}." + raise ValueError(msg) return self.tagged_nodes[idx] @@ -629,7 +632,8 @@ def get_tagged_line( if tg.tag == tag: return tg else: - raise ValueError(f"Cannot find TaggedLine with tag {tag}.") + msg = f"Cannot find TaggedLine with tag {tag}." + raise ValueError(msg) def get_tagged_line_by_coordinates( self, @@ -661,11 +665,10 @@ def get_tagged_line_by_coordinates( ) if not self.check_nearest_tol(point1=ln_mid, point2=(mid_point.x, mid_point.y)): - raise ValueError( - f"The line with mid-point at ({mid_point}) is not close to a mid-point " - f"of a tagged line in the mesh. The nearest tagged line has a " - f"mid-point that is located at {ln_mid}." - ) + msg = f"The line with mid-point at ({mid_point}) is not close to a " + msg += "mid-point of a tagged line in the mesh. The nearest tagged line " + msg += f"has a mid-point that is located at {ln_mid}." + raise ValueError(msg) return self.tagged_lines[idx] @@ -688,7 +691,8 @@ def get_line_element_by_tag( if line.line_tag == tag: return line else: - raise ValueError(f"Cannot find LineElement with tag {tag}.") + msg = f"Cannot find LineElement with tag {tag}." + raise ValueError(msg) def get_finite_element_by_tag( self, @@ -709,7 +713,8 @@ def get_finite_element_by_tag( if el.el_tag == tag: return el else: - raise ValueError(f"Cannot find FiniteElement with tag {tag}.") + msg = f"Cannot find FiniteElement with tag {tag}." + raise ValueError(msg) def plot_mesh( self, @@ -745,7 +750,9 @@ def plot_mesh( """ # create plot and setup the plot with plotting_context(title=title, **kwargs) as (_, ax): - assert ax + if not ax: + msg = "Matplotlib axes not created." + raise RuntimeError(msg) # get number of unique materials unique_materials = list(set(self.materials)) @@ -779,11 +786,7 @@ def plot_mesh( # generate collection of polygons for each material for idx in range(num_materials): # get face color - if materials: - fcs = colors[idx] - else: - fcs = [1.0, 1.0, 1.0, 0.0] - + fcs = colors[idx] if materials else [1.0, 1.0, 1.0, 0.0] col = collections.PolyCollection( verts[idx], edgecolors=[0.0, 0.0, 0.0, alpha], diff --git a/tests/conftest.py b/tests/conftest.py index a0b7cf1..2f3b692 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -2,7 +2,7 @@ from __future__ import annotations -from collections.abc import Callable +from typing import TYPE_CHECKING import pytest @@ -11,6 +11,9 @@ from planestress.pre.boundary_condition import LineLoad, LineSupport, NodeSupport from planestress.pre.library import rectangle +if TYPE_CHECKING: + from collections.abc import Callable + @pytest.fixture def unit_square() -> Callable: diff --git a/tests/validation/test_validation_strand7.py b/tests/validation/test_validation_strand7.py index 0fd794a..d6e25cf 100644 --- a/tests/validation/test_validation_strand7.py +++ b/tests/validation/test_validation_strand7.py @@ -108,7 +108,8 @@ def test_vls9(el_type): mesh_sizes=1000.0, quad_mesh=True, mesh_order=2, mesh_algorithm=11 ) else: - raise ValueError(f"{el_type} element not supported for this test.") + msg = f"{el_type} element not supported for this test." + raise ValueError(msg) # solve ps = PlaneStress(geom, [case])