update to R 4.5.0 and its base package

Author: cderv

tests/renv.lock

@@ -121,84 +121,13 @@
     },
     "MASS": {
       "Package": "MASS",
-      "Version": "7.3-61",
-      "Source": "Repository",
-      "Priority": "recommended",
-      "Date": "2024-06-10",
-      "Revision": "$Rev: 3657 $",
-      "Depends": [
-        "R (>= 4.4.0)",
-        "grDevices",
-        "graphics",
-        "stats",
-        "utils"
-      ],
-      "Imports": [
-        "methods"
-      ],
-      "Suggests": [
-        "lattice",
-        "nlme",
-        "nnet",
-        "survival"
-      ],
-      "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"ripley@stats.ox.ac.uk\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))",
-      "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
-      "Title": "Support Functions and Datasets for Venables and Ripley's MASS",
-      "LazyData": "yes",
-      "ByteCompile": "yes",
-      "License": "GPL-2 | GPL-3",
-      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
-      "Contact": "<MASS@stats.ox.ac.uk>",
-      "NeedsCompilation": "yes",
-      "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
-      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
-      "Repository": "CRAN"
+      "Version": "7.3-65",
+      "Source": "Repository"
     },
     "Matrix": {
       "Package": "Matrix",
-      "Version": "1.7-1",
-      "Source": "Repository",
-      "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
-      "Date": "2024-10-17",
-      "Priority": "recommended",
-      "Title": "Sparse and Dense Matrix Classes and Methods",
-      "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries.  Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
-      "License": "GPL (>= 2) | file LICENCE",
-      "URL": "https://Matrix.R-forge.R-project.org",
-      "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
-      "Contact": "Matrix-authors@R-project.org",
-      "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's matrix implementation\"))",
-      "Depends": [
-        "R (>= 4.4.0)",
-        "methods"
-      ],
-      "Imports": [
-        "grDevices",
-        "graphics",
-        "grid",
-        "lattice",
-        "stats",
-        "utils"
-      ],
-      "Suggests": [
-        "MASS",
-        "datasets",
-        "sfsmisc",
-        "tools"
-      ],
-      "Enhances": [
-        "SparseM",
-        "graph"
-      ],
-      "LazyData": "no",
-      "LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
-      "BuildResaveData": "no",
-      "Encoding": "UTF-8",
-      "NeedsCompilation": "yes",
-      "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (<https://orcid.org/0000-0003-2753-1437>, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (base R's matrix implementation)",
-      "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
-      "Repository": "CRAN"
+      "Version": "1.7-3",
+      "Source": "Repository"
     },
     "R6": {
       "Package": "R6",
@@ -3397,37 +3326,8 @@
     },
     "nlme": {
       "Package": "nlme",
-      "Version": "3.1-166",
-      "Source": "Repository",
-      "Date": "2024-08-13",
-      "Priority": "recommended",
-      "Title": "Linear and Nonlinear Mixed Effects Models",
-      "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\")))",
-      "Contact": "see 'MailingList'",
-      "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
-      "Depends": [
-        "R (>= 3.6.0)"
-      ],
-      "Imports": [
-        "graphics",
-        "stats",
-        "utils",
-        "lattice"
-      ],
-      "Suggests": [
-        "MASS",
-        "SASmixed"
-      ],
-      "LazyData": "yes",
-      "Encoding": "UTF-8",
-      "License": "GPL (>= 2)",
-      "BugReports": "https://bugs.r-project.org",
-      "MailingList": "R-help@r-project.org",
-      "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
-      "NeedsCompilation": "yes",
-      "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre]",
-      "Maintainer": "R Core Team <R-core@R-project.org>",
-      "Repository": "CRAN"
+      "Version": "3.1-168",
+      "Source": "Repository"
     },
     "officer": {
       "Package": "officer",

tests/renv/settings.json

@@ -8,7 +8,7 @@
     "https://yihui.r-universe.dev",
     "https://rstudio.r-universe.dev"
   ],
-  "r.version": "4.4.2",
+  "r.version": "4.5.0",
   "snapshot.type": "explicit",
   "use.cache": true,
   "vcs.ignore.cellar": true,