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‎.coveragerc‎

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__init__.py
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*/contrib/*
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*/test/*
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include=libpysal/*
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[report]
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omit =
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__init__.py
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*/contrib/*
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*/test/*
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‎.travis.yml‎

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include:
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- env: ENV_FILE="ci/travis/36-latest-conda-forge.yaml"
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- env: ENV_FILE="ci/travis/37-latest-conda-forge.yaml"
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- env: ENV_FILE="ci/travis/38-latest-conda-forge.yaml"
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install:
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# Install conda
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- python setup.py install
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- python -c 'import libpysal; libpysal.examples.fetch_all()'
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- rm -rf /home/travis/pysal_data/StLouis
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- nosetests --with-doctest --verbose --with-coverage --cover-package=libpysal -I shapely_ext.py;
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- py.test libpysal --cov libpysal -v --cov-report term-missing
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#- cd doc; make pickle; make doctest
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notifications:
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on_failure: always
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after_success:
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- coveralls
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- codecov

‎README.rst‎

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.. image:: https://travis-ci.org/pysal/libpysal.svg
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:target: https://travis-ci.org/pysal/libpysal
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.. image:: https://ci.appveyor.com/api/projects/status/1dg7939hqjx64ta4?svg=true
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:target: https://ci.appveyor.com/project/pysal/libpysal
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.. image:: https://codecov.io/gh/pysal/libpysal/branch/master/graph/badge.svg
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:target: https://codecov.io/gh/pysal/libpysal
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.. image:: https://badge.fury.io/py/libpysal.svg
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:target: https://badge.fury.io/py/libpysal
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.. image:: https://img.shields.io/conda/vn/conda-forge/libpysal.svg
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:target: https://anaconda.org/conda-forge/libpysal
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.. image:: https://zenodo.org/badge/81501824.svg
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:target: https://zenodo.org/badge/latestdoi/81501824
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:target: https://zenodo.org/badge/latestdoi/81501824
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‎appveyor.yml‎

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# With infos from
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# http://tjelvarolsson.com/blog/how-to-continuously-test-your-python-code-on-windows-using-appveyor/
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# https://packaging.python.org/en/latest/appveyor/
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# https://github.com/rmcgibbo/python-appveyor-conda-example
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environment:
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matrix:
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- PYTHON_VERSION: "3.6"
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MINICONDA: C:\Miniconda36-x64
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ENV_FILE: "ci/travis/36-latest-conda-forge.yaml"
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- PYTHON_VERSION: "3.7"
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MINICONDA: C:\Miniconda37-x64
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ENV_FILE: "ci/travis/37-latest-conda-forge.yaml"
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- PYTHON_VERSION: "3.8"
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MINICONDA: C:\Miniconda37-x64
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ENV_FILE: "ci/travis/38-latest-conda-forge.yaml"
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# all our python builds have to happen in tests_script...
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build: false
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init:
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- "ECHO %PYTHON_VERSION% %MINICONDA%"
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install:
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# cancel older builds for the same PR
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- ps: if ($env:APPVEYOR_PULL_REQUEST_NUMBER -and $env:APPVEYOR_BUILD_NUMBER -ne ((Invoke-RestMethod `
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https://ci.appveyor.com/api/projects/$env:APPVEYOR_ACCOUNT_NAME/$env:APPVEYOR_PROJECT_SLUG/history?recordsNumber=50).builds | `
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Where-Object pullRequestId -eq $env:APPVEYOR_PULL_REQUEST_NUMBER)[0].buildNumber) { `
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throw "There are newer queued builds for this pull request, failing early." }
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# set up environment
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- CALL "%MINICONDA%\\Scripts\\activate.bat"
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- conda config --set always_yes yes --set show_channel_urls true --set changeps1 no
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- conda update conda
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# this is basically equivalent to what conda init does. It changes the "conda" to
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# be a .bat script that sets appropriate PATH entries before conda hits problems.
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# This PATH modification only works with conda 4.6+, but it won't hurt other versions.
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- set "PATH=%MINICONDA%\condabin:%PATH%"
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- conda info -a
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# free channel needed for older envs (< py37), see
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# https://github.com/conda/conda/issues/8849
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- conda config --set restore_free_channel true
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- conda env create --file="${ENV_FILE}"
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test_script:
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# this uses condabin/conda.bat because of our PATH modification above
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- conda activate test
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- conda list
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- pytest libpysal -v

‎ci/travis/36-latest-conda-forge.yaml‎

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dependencies:
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- python=3.6
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- six
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- scipy
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- beautifulsoup4
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# required
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# testing
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- pytest
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- pytest-cov
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- codecov
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- nose
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- codecov
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- matplotlib

‎ci/travis/37-latest-conda-forge.yaml‎

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dependencies:
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- python=3.7
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- six
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- scipy
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- beautifulsoup4
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# testing
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- nose
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- pytest
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- pytest-cov
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- codecov
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- matplotlib
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# optional

‎ci/travis/38-latest-conda-forge.yaml‎

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name: test
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channels:
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- conda-forge
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dependencies:
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- python=3.8
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- six
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- scipy
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- beautifulsoup4
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# testing
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- pytest
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- pytest-cov
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- codecov
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- matplotlib
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# optional
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- geopandas
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- numba
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- zstd

‎docs/.buildinfo‎

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# Sphinx build info version 1
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# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
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config: edff10633f3293ef57bb9bbd47c2c15c
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config: bac9732b755ab0451ca4772e960c2eb3
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tags: 645f666f9bcd5a90fca523b33c5a78b7

‎docs/_modules/index.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<meta charset="utf-8" />
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<title>Overview: module code &#8212; libpysal v4.2.1 Manual</title>
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<title>Overview: module code &#8212; libpysal v4.2.2 Manual</title>
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<link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
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<link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
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<link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
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<script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
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<script type="text/javascript" src="../_static/jquery.js"></script>
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<script type="text/javascript" src="../_static/underscore.js"></script>
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<script type="text/javascript" src="../_static/doctools.js"></script>
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<script type="text/javascript" src="../_static/language_data.js"></script>
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<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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<script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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<script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
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<script src="../_static/jquery.js"></script>
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<script src="../_static/underscore.js"></script>
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<script src="../_static/doctools.js"></script>
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<script src="../_static/language_data.js"></script>
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<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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<script type="text/x-mathjax-config">MathJax.Hub.Config({"tex2jax": {"inlineMath": [["$", "$"], ["\\(", "\\)"]], "processEscapes": true, "ignoreClass": "document", "processClass": "math|output_area"}})</script>
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<script type="text/javascript" src="../_static/js/jquery-1.11.0.min.js"></script>
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<script type="text/javascript" src="../_static/js/jquery-fix.js"></script>
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<script type="text/javascript" src="../_static/bootstrap-3.3.7/js/bootstrap.min.js"></script>
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<script type="text/javascript" src="../_static/bootstrap-sphinx.js"></script>
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<link rel="shortcut icon" href="../_static/pysal_favicon.ico"/>
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<link rel="index" title="Index" href="../genindex.html" />
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<link rel="search" title="Search" href="../search.html" />
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<meta charset='utf-8'>
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<meta http-equiv='X-UA-Compatible' content='IE=edge,chrome=1'>
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<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=1'>
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<meta name="apple-mobile-web-app-capable" content="yes">
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<script type="text/javascript" src="../_static/js/jquery-1.11.0.min.js "></script>
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<script type="text/javascript" src="../_static/js/jquery-fix.js "></script>
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<script type="text/javascript" src="../_static/bootstrap-3.3.7/js/bootstrap.min.js "></script>
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<script type="text/javascript" src="../_static/bootstrap-sphinx.js "></script>
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</head><body>
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</button>
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<a class="navbar-brand" href="../index.html">
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libpysal</a>
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<span class="navbar-text navbar-version pull-left"><b>4.2.1</b></span>
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<span class="navbar-text navbar-version pull-left"><b>4.2.2</b></span>
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<div class="collapse navbar-collapse nav-collapse">
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<div class="container">
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<div class="col-md-12 content">
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<div class="body col-md-12 content" role="main">
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<h1>All modules for which code is available</h1>
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<ul><li><a href="libpysal/cg/alpha_shapes.html">libpysal.cg.alpha_shapes</a></li>
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</p>
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<p>
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&copy; Copyright 2018-, pysal developers.<br/>
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.2.<br/>
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.1.<br/>
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</p>
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</footer>

‎docs/_modules/libpysal/cg/alpha_shapes.html‎

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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<meta charset="utf-8" />
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<title>libpysal.cg.alpha_shapes &#8212; libpysal v4.2.1 Manual</title>
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<title>libpysal.cg.alpha_shapes &#8212; libpysal v4.2.2 Manual</title>
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<link rel="stylesheet" href="../../../_static/bootstrap-sphinx.css" type="text/css" />
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<link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
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<link rel="stylesheet" type="text/css" href="../../../_static/pysal-styles.css" />
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<script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../_static/documentation_options.js"></script>
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<script type="text/javascript" src="../../../_static/jquery.js"></script>
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<script type="text/javascript" src="../../../_static/underscore.js"></script>
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<script type="text/javascript" src="../../../_static/doctools.js"></script>
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<script type="text/javascript" src="../../../_static/language_data.js"></script>
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<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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<script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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<script id="documentation_options" data-url_root="../../../" src="../../../_static/documentation_options.js"></script>
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<script src="../../../_static/jquery.js"></script>
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<script src="../../../_static/underscore.js"></script>
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<script src="../../../_static/doctools.js"></script>
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<script src="../../../_static/language_data.js"></script>
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<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
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<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
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<script type="text/x-mathjax-config">MathJax.Hub.Config({"tex2jax": {"inlineMath": [["$", "$"], ["\\(", "\\)"]], "processEscapes": true, "ignoreClass": "document", "processClass": "math|output_area"}})</script>
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<script type="text/javascript" src="../../../_static/js/jquery-1.11.0.min.js"></script>
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<script type="text/javascript" src="../../../_static/js/jquery-fix.js"></script>
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<script type="text/javascript" src="../../../_static/bootstrap-3.3.7/js/bootstrap.min.js"></script>
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<script type="text/javascript" src="../../../_static/bootstrap-sphinx.js"></script>
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<link rel="shortcut icon" href="../../../_static/pysal_favicon.ico"/>
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<link rel="index" title="Index" href="../../../genindex.html" />
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<link rel="search" title="Search" href="../../../search.html" />
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<meta charset='utf-8'>
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<meta http-equiv='X-UA-Compatible' content='IE=edge,chrome=1'>
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<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=1'>
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<meta name="apple-mobile-web-app-capable" content="yes">
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<script type="text/javascript" src="../../../_static/js/jquery-1.11.0.min.js "></script>
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<script type="text/javascript" src="../../../_static/js/jquery-fix.js "></script>
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<script type="text/javascript" src="../../../_static/bootstrap-3.3.7/js/bootstrap.min.js "></script>
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<script type="text/javascript" src="../../../_static/bootstrap-sphinx.js "></script>
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</head><body>
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</button>
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<a class="navbar-brand" href="../../../index.html">
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libpysal</a>
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<span class="navbar-text navbar-version pull-left"><b>4.2.1</b></span>
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<span class="navbar-text navbar-version pull-left"><b>4.2.2</b></span>
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<div class="collapse navbar-collapse nav-collapse">
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<h1>Source code for libpysal.cg.alpha_shapes</h1><div class="highlight"><pre>
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<span></span><span class="sd">&quot;&quot;&quot;</span>
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<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
145145
<span class="kn">import</span> <span class="nn">scipy.spatial</span> <span class="k">as</span> <span class="nn">spat</span>
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<span class="kn">from</span> <span class="nn">..common</span> <span class="k">import</span> <span class="n">requires</span><span class="p">,</span> <span class="n">jit</span><span class="p">,</span> <span class="n">HAS_JIT</span>
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<span class="kn">from</span> <span class="nn">..common</span> <span class="kn">import</span> <span class="n">requires</span><span class="p">,</span> <span class="n">jit</span><span class="p">,</span> <span class="n">HAS_JIT</span>
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<span class="k">if</span> <span class="ow">not</span> <span class="n">HAS_JIT</span><span class="p">:</span>
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<span class="kn">from</span> <span class="nn">warnings</span> <span class="k">import</span> <span class="n">warn</span>
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<span class="kn">from</span> <span class="nn">warnings</span> <span class="kn">import</span> <span class="n">warn</span>
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<span class="n">NUMBA_WARN</span> <span class="o">=</span> <span class="s2">&quot;Numba not imported, so alpha shape construction may be slower than expected.&quot;</span>
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<span class="n">EPS</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
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<span class="sd"> dtype: geometry</span>
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<span class="sd"> </span>
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<span class="sd"> &#39;&#39;&#39;</span>
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<span class="kn">from</span> <span class="nn">shapely.ops</span> <span class="k">import</span> <span class="n">polygonize</span>
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<span class="kn">from</span> <span class="nn">shapely.geometry</span> <span class="kn">import</span> <span class="n">LineString</span>
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<span class="kn">from</span> <span class="nn">shapely.ops</span> <span class="kn">import</span> <span class="n">polygonize</span>
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<span class="kn">from</span> <span class="nn">geopandas</span> <span class="kn">import</span> <span class="n">GeoSeries</span>
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548548
<span class="n">triangles_reduced</span> <span class="o">=</span> <span class="n">triangles</span><span class="p">[</span><span class="n">radii</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="o">/</span><span class="n">alpha</span><span class="p">]</span>
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<span class="n">outer_triangulation</span> <span class="o">=</span> <span class="n">get_single_faces</span><span class="p">(</span><span class="n">triangles_reduced</span><span class="p">)</span>
@@ -601,7 +601,7 @@ <h1>Source code for libpysal.cg.alpha_shapes</h1><div class="highlight"><pre>
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<span class="k">if</span> <span class="ow">not</span> <span class="n">HAS_JIT</span><span class="p">:</span>
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<span class="n">warn</span><span class="p">(</span><span class="n">NUMBA_WARN</span><span class="p">)</span>
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<span class="k">if</span> <span class="n">xys</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="k">import</span> <span class="n">ops</span><span class="p">,</span> <span class="n">geometry</span> <span class="k">as</span> <span class="n">geom</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="kn">import</span> <span class="n">ops</span><span class="p">,</span> <span class="n">geometry</span> <span class="k">as</span> <span class="n">geom</span>
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<span class="k">return</span> <span class="n">ops</span><span class="o">.</span><span class="n">cascaded_union</span><span class="p">([</span><span class="n">geom</span><span class="o">.</span><span class="n">Point</span><span class="p">(</span><span class="n">xy</span><span class="p">)</span>
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<span class="k">for</span> <span class="n">xy</span> <span class="ow">in</span> <span class="n">xys</span><span class="p">])</span>\
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<span class="o">.</span><span class="n">convex_hull</span><span class="o">.</span><span class="n">buffer</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
@@ -701,9 +701,9 @@ <h1>Source code for libpysal.cg.alpha_shapes</h1><div class="highlight"><pre>
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<span class="sd"> &#39;&#39;&#39;</span>
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<span class="k">if</span> <span class="ow">not</span> <span class="n">HAS_JIT</span><span class="p">:</span>
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<span class="n">warn</span><span class="p">(</span><span class="n">NUMBA_WARN</span><span class="p">)</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="k">import</span> <span class="n">geometry</span> <span class="k">as</span> <span class="n">geom</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="kn">import</span> <span class="n">geometry</span> <span class="k">as</span> <span class="n">geom</span>
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<span class="k">if</span> <span class="n">xys</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="k">import</span> <span class="n">ops</span>
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<span class="kn">from</span> <span class="nn">shapely</span> <span class="kn">import</span> <span class="n">ops</span>
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<span class="k">return</span> <span class="n">ops</span><span class="o">.</span><span class="n">cascaded_union</span><span class="p">([</span><span class="n">geom</span><span class="o">.</span><span class="n">Point</span><span class="p">(</span><span class="n">xy</span><span class="p">)</span>
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<span class="k">for</span> <span class="n">xy</span> <span class="ow">in</span> <span class="n">xys</span><span class="p">])</span>\
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<span class="o">.</span><span class="n">convex_hull</span><span class="o">.</span><span class="n">buffer</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
@@ -771,7 +771,7 @@ <h1>Source code for libpysal.cg.alpha_shapes</h1><div class="highlight"><pre>
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</p>
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<p>
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&copy; Copyright 2018-, pysal developers.<br/>
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.2.2.<br/>
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 2.4.1.<br/>
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</p>
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</div>
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</footer>

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