Use conda-lock to create test environments

Author: maresb

.github/workflows/ci.yml

@@ -6,6 +6,11 @@ on:
   push:
     branches: [main]
 
+defaults:
+  run:
+    # Ensure activation for micromamba
+    shell: bash -leo pipefail {0} {0}
+
 jobs:
   lint:
     runs-on: ubuntu-latest
@@ -30,10 +35,12 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
-      - name: Set up Python
-        uses: actions/setup-python@v3
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: ${{ matrix.python-version }}
+          micromamba-version: 1.5.5-0
+          environment-file: conda/conda-lock-${{ matrix.python-version }}.yaml
+          environment-name: causalpy-test-${{ matrix.python-version }}
+          cache-environment: true
       - name: Run doctests
         run: |
           pip install -e .[test]

.github/workflows/update-lockfile.yml

@@ -0,0 +1,68 @@
+name: Update lockfile
+
+on:
+  workflow_dispatch:
+  schedule:
+  # At 06:12 UTC on Monday
+  - cron: 12 6 * * MON
+
+jobs:
+  conda-lock:
+    strategy:
+        matrix:
+          python-version: ["3.8", "3.9", "3.10"]
+    defaults:
+      run:
+        # Ensure the environment is activated
+        # <https://github.com/mamba-org/setup-micromamba#about-login-shells>
+        shell: bash -l {0}
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - name: Install Conda environment with Micromamba
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: conda/environment-conda-lock.yaml
+
+    - name: Run conda-lock
+      run: |
+        conda-lock lock --mamba \
+        --extras test \
+        --filter-extras \
+        --file conda/environment-test-${{ matrix.python-version }}.yaml \
+        --lockfile conda/conda-lock-${{ matrix.python-version }}.yaml
+
+    - name: Upload lockfile
+      uses: actions/upload-artifact@v2
+      with:
+        name: conda-lock-${{ matrix.python-version }}.yaml
+        path: conda/conda-lock-${{ matrix.python-version }}.yaml
+
+  open-pr:
+    needs: conda-lock
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v4
+    - name: Download all lockfiles
+      uses: actions/download-artifact@v2
+      with:
+          name: conda-lock-*.yaml
+          path: conda
+    - name: Open a pull request
+      uses: peter-evans/create-pull-request@v5
+      with:
+        # This PAT should have read-write permissions for "Pull Requests"
+        # and read-write permissions for "Contents".
+        token: ${{ secrets.GH_PAT_FOR_PR }}
+        commit-message: Relock dependencies
+        title: Relock dependencies
+        body: >
+          This pull request relocks the dependencies with conda-lock.
+          It was created automatically with the GitHub Action
+          [update-lockfile.yml](.github/workflows/update-lockfile.yml).
+        branch: relock-deps
+        labels: conda-lock
+        delete-branch: true
+        committer: update-lockfile.yml <nobody@pymc-labs.com>
+        author: update-lockfile.yml <nobody@pymc-labs.com>