Reorganized JAX link folder structure

Author: HangenYuu

pytensor/link/jax/dispatch/__init__.py

@@ -2,18 +2,20 @@
 from pytensor.link.jax.dispatch.basic import jax_funcify, jax_typify
 
 # Load dispatch specializations
-import pytensor.link.jax.dispatch.scalar
-import pytensor.link.jax.dispatch.tensor_basic
-import pytensor.link.jax.dispatch.subtensor
-import pytensor.link.jax.dispatch.shape
+import pytensor.link.jax.dispatch.blas
+import pytensor.link.jax.dispatch.blockwise
+import pytensor.link.jax.dispatch.elemwise
 import pytensor.link.jax.dispatch.extra_ops
+import pytensor.link.jax.dispatch.math
 import pytensor.link.jax.dispatch.nlinalg
-import pytensor.link.jax.dispatch.slinalg
 import pytensor.link.jax.dispatch.random
-import pytensor.link.jax.dispatch.elemwise
+import pytensor.link.jax.dispatch.scalar
 import pytensor.link.jax.dispatch.scan
-import pytensor.link.jax.dispatch.sparse
-import pytensor.link.jax.dispatch.blockwise
+import pytensor.link.jax.dispatch.shape
+import pytensor.link.jax.dispatch.slinalg
 import pytensor.link.jax.dispatch.sort
+import pytensor.link.jax.dispatch.sparse
+import pytensor.link.jax.dispatch.subtensor
+import pytensor.link.jax.dispatch.tensor_basic
 
 # isort: on

pytensor/link/jax/dispatch/blas.py

@@ -0,0 +1,14 @@
+import jax.numpy as jnp
+
+from pytensor.link.jax.dispatch import jax_funcify
+from pytensor.tensor.blas import BatchedDot
+
+
+@jax_funcify.register(BatchedDot)
+def jax_funcify_BatchedDot(op, **kwargs):
+    def batched_dot(a, b):
+        if a.shape[0] != b.shape[0]:
+            raise TypeError("Shapes must match along the first dimension of BatchedDot")
+        return jnp.matmul(a, b)
+
+    return batched_dot

pytensor/link/jax/dispatch/math.py

@@ -0,0 +1,60 @@
+import jax.numpy as jnp
+import numpy as np
+
+from pytensor.link.jax.dispatch import jax_funcify
+from pytensor.tensor.math import Argmax, Dot, Max
+
+
+@jax_funcify.register(Dot)
+def jax_funcify_Dot(op, **kwargs):
+    def dot(x, y):
+        return jnp.dot(x, y)
+
+    return dot
+
+
+@jax_funcify.register(Max)
+def jax_funcify_Max(op, **kwargs):
+    axis = op.axis
+
+    def max(x):
+        max_res = jnp.max(x, axis)
+
+        return max_res
+
+    return max
+
+
+@jax_funcify.register(Argmax)
+def jax_funcify_Argmax(op, **kwargs):
+    axis = op.axis
+
+    def argmax(x):
+        if axis is None:
+            axes = tuple(range(x.ndim))
+        else:
+            axes = tuple(int(ax) for ax in axis)
+
+        # NumPy does not support multiple axes for argmax; this is a
+        # work-around
+        keep_axes = np.array([i for i in range(x.ndim) if i not in axes], dtype="int64")
+        # Not-reduced axes in front
+        transposed_x = jnp.transpose(
+            x, tuple(np.concatenate((keep_axes, np.array(axes, dtype="int64"))))
+        )
+        kept_shape = transposed_x.shape[: len(keep_axes)]
+        reduced_shape = transposed_x.shape[len(keep_axes) :]
+
+        # Numpy.prod returns 1.0 when arg is empty, so we cast it to int64
+        # Otherwise reshape would complain citing float arg
+        new_shape = (
+            *kept_shape,
+            np.prod(np.array(reduced_shape, dtype="int64"), dtype="int64"),
+        )
+        reshaped_x = transposed_x.reshape(tuple(new_shape))
+
+        max_idx_res = jnp.argmax(reshaped_x, axis=-1).astype("int64")
+
+        return max_idx_res
+
+    return argmax

pytensor/link/jax/dispatch/nlinalg.py

@@ -1,9 +1,6 @@
 import jax.numpy as jnp
-import numpy as np
 
 from pytensor.link.jax.dispatch import jax_funcify
-from pytensor.tensor.blas import BatchedDot
-from pytensor.tensor.math import Argmax, Dot, Max
 from pytensor.tensor.nlinalg import (
     SVD,
     Det,
@@ -80,14 +77,6 @@ def qr_full(x, mode=mode):
     return qr_full
 
 
-@jax_funcify.register(Dot)
-def jax_funcify_Dot(op, **kwargs):
-    def dot(x, y):
-        return jnp.dot(x, y)
-
-    return dot
-
-
 @jax_funcify.register(MatrixPinv)
 def jax_funcify_Pinv(op, **kwargs):
     def pinv(x):
@@ -96,66 +85,9 @@ def pinv(x):
     return pinv
 
 
-@jax_funcify.register(BatchedDot)
-def jax_funcify_BatchedDot(op, **kwargs):
-    def batched_dot(a, b):
-        if a.shape[0] != b.shape[0]:
-            raise TypeError("Shapes must match in the 0-th dimension")
-        return jnp.matmul(a, b)
-
-    return batched_dot
-
-
 @jax_funcify.register(KroneckerProduct)
 def jax_funcify_KroneckerProduct(op, **kwargs):
     def _kron(x, y):
         return jnp.kron(x, y)
 
     return _kron
-
-
-@jax_funcify.register(Max)
-def jax_funcify_Max(op, **kwargs):
-    axis = op.axis
-
-    def max(x):
-        max_res = jnp.max(x, axis)
-
-        return max_res
-
-    return max
-
-
-@jax_funcify.register(Argmax)
-def jax_funcify_Argmax(op, **kwargs):
-    axis = op.axis
-
-    def argmax(x):
-        if axis is None:
-            axes = tuple(range(x.ndim))
-        else:
-            axes = tuple(int(ax) for ax in axis)
-
-        # NumPy does not support multiple axes for argmax; this is a
-        # work-around
-        keep_axes = np.array([i for i in range(x.ndim) if i not in axes], dtype="int64")
-        # Not-reduced axes in front
-        transposed_x = jnp.transpose(
-            x, tuple(np.concatenate((keep_axes, np.array(axes, dtype="int64"))))
-        )
-        kept_shape = transposed_x.shape[: len(keep_axes)]
-        reduced_shape = transposed_x.shape[len(keep_axes) :]
-
-        # Numpy.prod returns 1.0 when arg is empty, so we cast it to int64
-        # Otherwise reshape would complain citing float arg
-        new_shape = (
-            *kept_shape,
-            np.prod(np.array(reduced_shape, dtype="int64"), dtype="int64"),
-        )
-        reshaped_x = transposed_x.reshape(tuple(new_shape))
-
-        max_idx_res = jnp.argmax(reshaped_x, axis=-1).astype("int64")
-
-        return max_idx_res
-
-    return argmax

tests/link/jax/test_blas.py

@@ -0,0 +1,36 @@
+import numpy as np
+import pytest
+
+from pytensor.compile.function import function
+from pytensor.compile.mode import Mode
+from pytensor.configdefaults import config
+from pytensor.graph.fg import FunctionGraph
+from pytensor.graph.op import get_test_value
+from pytensor.graph.rewriting.db import RewriteDatabaseQuery
+from pytensor.link.jax import JAXLinker
+from pytensor.tensor import blas as pt_blas
+from pytensor.tensor.type import tensor3
+from tests.link.jax.test_basic import compare_jax_and_py
+
+
+def test_jax_BatchedDot():
+    # tensor3 . tensor3
+    a = tensor3("a")
+    a.tag.test_value = (
+        np.linspace(-1, 1, 10 * 5 * 3).astype(config.floatX).reshape((10, 5, 3))
+    )
+    b = tensor3("b")
+    b.tag.test_value = (
+        np.linspace(1, -1, 10 * 3 * 2).astype(config.floatX).reshape((10, 3, 2))
+    )
+    out = pt_blas.BatchedDot()(a, b)
+    fgraph = FunctionGraph([a, b], [out])
+    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
+
+    # A dimension mismatch should raise a TypeError for compatibility
+    inputs = [get_test_value(a)[:-1], get_test_value(b)]
+    opts = RewriteDatabaseQuery(include=[None], exclude=["cxx_only", "BlasOpt"])
+    jax_mode = Mode(JAXLinker(), opts)
+    pytensor_jax_fn = function(fgraph.inputs, fgraph.outputs, mode=jax_mode)
+    with pytest.raises(TypeError):
+        pytensor_jax_fn(*inputs)

tests/link/jax/test_math.py

@@ -0,0 +1,52 @@
+import numpy as np
+import pytest
+
+from pytensor.configdefaults import config
+from pytensor.graph.fg import FunctionGraph
+from pytensor.graph.op import get_test_value
+from pytensor.tensor.math import Argmax, Max, maximum
+from pytensor.tensor.math import max as pt_max
+from pytensor.tensor.type import dvector, matrix, scalar, vector
+from tests.link.jax.test_basic import compare_jax_and_py
+
+
+jax = pytest.importorskip("jax")
+
+
+def test_jax_max_and_argmax():
+    # Test that a single output of a multi-output `Op` can be used as input to
+    # another `Op`
+    x = dvector()
+    mx = Max([0])(x)
+    amx = Argmax([0])(x)
+    out = mx * amx
+    out_fg = FunctionGraph([x], [out])
+    compare_jax_and_py(out_fg, [np.r_[1, 2]])
+
+
+def test_dot():
+    y = vector("y")
+    y.tag.test_value = np.r_[1.0, 2.0].astype(config.floatX)
+    x = vector("x")
+    x.tag.test_value = np.r_[3.0, 4.0].astype(config.floatX)
+    A = matrix("A")
+    A.tag.test_value = np.empty((2, 2), dtype=config.floatX)
+    alpha = scalar("alpha")
+    alpha.tag.test_value = np.array(3.0, dtype=config.floatX)
+    beta = scalar("beta")
+    beta.tag.test_value = np.array(5.0, dtype=config.floatX)
+
+    # This should be converted into a `Gemv` `Op` when the non-JAX compatible
+    # optimizations are turned on; however, when using JAX mode, it should
+    # leave the expression alone.
+    out = y.dot(alpha * A).dot(x) + beta * y
+    fgraph = FunctionGraph([y, x, A, alpha, beta], [out])
+    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
+
+    out = maximum(y, x)
+    fgraph = FunctionGraph([y, x], [out])
+    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
+
+    out = pt_max(y)
+    fgraph = FunctionGraph([y], [out])
+    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])

tests/link/jax/test_nlinalg.py

@@ -2,46 +2,16 @@
 import pytest
 
 from pytensor.compile.function import function
-from pytensor.compile.mode import Mode
 from pytensor.configdefaults import config
 from pytensor.graph.fg import FunctionGraph
-from pytensor.graph.op import get_test_value
-from pytensor.graph.rewriting.db import RewriteDatabaseQuery
-from pytensor.link.jax import JAXLinker
-from pytensor.tensor import blas as pt_blas
 from pytensor.tensor import nlinalg as pt_nlinalg
-from pytensor.tensor.math import Argmax, Max, maximum
-from pytensor.tensor.math import max as pt_max
-from pytensor.tensor.type import dvector, matrix, scalar, tensor3, vector
+from pytensor.tensor.type import matrix
 from tests.link.jax.test_basic import compare_jax_and_py
 
 
 jax = pytest.importorskip("jax")
 
 
-def test_jax_BatchedDot():
-    # tensor3 . tensor3
-    a = tensor3("a")
-    a.tag.test_value = (
-        np.linspace(-1, 1, 10 * 5 * 3).astype(config.floatX).reshape((10, 5, 3))
-    )
-    b = tensor3("b")
-    b.tag.test_value = (
-        np.linspace(1, -1, 10 * 3 * 2).astype(config.floatX).reshape((10, 3, 2))
-    )
-    out = pt_blas.BatchedDot()(a, b)
-    fgraph = FunctionGraph([a, b], [out])
-    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
-
-    # A dimension mismatch should raise a TypeError for compatibility
-    inputs = [get_test_value(a)[:-1], get_test_value(b)]
-    opts = RewriteDatabaseQuery(include=[None], exclude=["cxx_only", "BlasOpt"])
-    jax_mode = Mode(JAXLinker(), opts)
-    pytensor_jax_fn = function(fgraph.inputs, fgraph.outputs, mode=jax_mode)
-    with pytest.raises(TypeError):
-        pytensor_jax_fn(*inputs)
-
-
 def test_jax_basic_multiout():
     rng = np.random.default_rng(213234)
 
@@ -79,45 +49,6 @@ def assert_fn(x, y):
     compare_jax_and_py(out_fg, [X.astype(config.floatX)], assert_fn=assert_fn)
 
 
-def test_jax_max_and_argmax():
-    # Test that a single output of a multi-output `Op` can be used as input to
-    # another `Op`
-    x = dvector()
-    mx = Max([0])(x)
-    amx = Argmax([0])(x)
-    out = mx * amx
-    out_fg = FunctionGraph([x], [out])
-    compare_jax_and_py(out_fg, [np.r_[1, 2]])
-
-
-def test_tensor_basics():
-    y = vector("y")
-    y.tag.test_value = np.r_[1.0, 2.0].astype(config.floatX)
-    x = vector("x")
-    x.tag.test_value = np.r_[3.0, 4.0].astype(config.floatX)
-    A = matrix("A")
-    A.tag.test_value = np.empty((2, 2), dtype=config.floatX)
-    alpha = scalar("alpha")
-    alpha.tag.test_value = np.array(3.0, dtype=config.floatX)
-    beta = scalar("beta")
-    beta.tag.test_value = np.array(5.0, dtype=config.floatX)
-
-    # This should be converted into a `Gemv` `Op` when the non-JAX compatible
-    # optimizations are turned on; however, when using JAX mode, it should
-    # leave the expression alone.
-    out = y.dot(alpha * A).dot(x) + beta * y
-    fgraph = FunctionGraph([y, x, A, alpha, beta], [out])
-    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
-
-    out = maximum(y, x)
-    fgraph = FunctionGraph([y, x], [out])
-    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
-
-    out = pt_max(y)
-    fgraph = FunctionGraph([y], [out])
-    compare_jax_and_py(fgraph, [get_test_value(i) for i in fgraph.inputs])
-
-
 def test_pinv():
     x = matrix("x")
     x_inv = pt_nlinalg.pinv(x)