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add CI similar to pymc
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‎buildosx‎

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#!/bin/sh
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export CFLAGS="-arch x86_64"
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export FFLAGS="-static -ff2c -arch x86_64"
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export LDFLAGS="-Wall -undefined dynamic_lookup -bundle -arch x86_64"
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rm -rf build
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python setupegg.py bdist_egg

‎codecov.yml‎

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codecov:
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require_ci_to_pass: no
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notify:
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after_n_builds: 6
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coverage:
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precision: 2
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round: down
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range: "70...100"
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status:
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project:
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default:
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# basic
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target: auto
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threshold: 1%
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base: auto
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patch:
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default:
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# basic
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target: 50%
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threshold: 1%
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base: auto
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ignore:
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- "pymc_experimental/tests/*"
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comment:
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layout: "reach, diff, flags, files"
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behavior: default
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require_changes: false # if true: only post the comment if coverage changes
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require_base: no # [yes :: must have a base report to post]
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require_head: yes # [yes :: must have a head report to post]
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branches: null # branch names that can post comment

‎conda-envs/environment-test-py37.yml‎

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name: pymc-test-py37
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channels:
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- conda-forge
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- defaults
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dependencies:
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- pymc>=4.0.0b1
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- pip
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- pytest-cov>=2.5
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- pytest>=3.0
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- python=3.7

‎conda-envs/environment-test-py38.yml‎

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name: pymc-test-py38
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channels:
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- conda-forge
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- defaults
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dependencies:
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- pymc>=4.0.0b1
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- pip
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- pytest-cov>=2.5
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- pytest>=3.0
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- python=3.8

‎conda-envs/environment-test-py39.yml‎

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name: pymc-test-py39
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channels:
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- conda-forge
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- defaults
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dependencies:
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- pymc>=4.0.0b1
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- pip
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- pytest-cov>=2.5
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- pytest>=3.0
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- python=3.9

‎conda-envs/windows-environment-test-py38.yml‎

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name: pymc-test-py38
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channels:
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- conda-forge
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- defaults
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dependencies:
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- pymc>=4.0.0b1
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- pip
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- pytest-cov>=2.5
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- pytest>=3.0
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- python=3.8

‎pymc_experimental/.github/workflows/test.yml‎

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name: pytest
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on:
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pull_request:
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push:
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branches: [main]
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paths:
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- ".github/workflows/*"
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- "pymc_experimental/**"
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- "setup.py"
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- "pyproject.toml"
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- "buildosx"
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- "conda-envs/**"
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- "codecov.yml"
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jobs:
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ubuntu:
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strategy:
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matrix:
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os: [ubuntu-18.04]
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floatx: [float32, float64]
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fail-fast: false
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runs-on: ${{ matrix.os }}
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env:
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TEST_SUBSET: ${{ matrix.test-subset }}
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AESARA_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native'
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defaults:
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run:
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shell: bash -l {0}
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steps:
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- uses: actions/checkout@v2
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- name: Cache conda
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uses: actions/cache@v1
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env:
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# Increase this value to reset cache if environment-test-py37.yml has not changed
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CACHE_NUMBER: 0
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with:
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path: ~/conda_pkgs_dir
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key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
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hashFiles('conda-envs/environment-test-py37.yml') }}
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- name: Cache multiple paths
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uses: actions/cache@v2
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env:
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# Increase this value to reset cache if requirements.txt has not changed
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CACHE_NUMBER: 0
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with:
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path: |
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~/.cache/pip
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$RUNNER_TOOL_CACHE/Python/*
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~\AppData\Local\pip\Cache
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key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{
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hashFiles('requirements.txt') }}
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- uses: conda-incubator/setup-miniconda@v2
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with:
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miniforge-variant: Mambaforge
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miniforge-version: latest
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mamba-version: "*"
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activate-environment: pymc-test-py37
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channel-priority: strict
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environment-file: conda-envs/environment-test-py37.yml
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use-mamba: true
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use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
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- name: Install-pymc
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run: |
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conda activate pymc-test-py37
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pip install -e .
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python --version
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- name: Run tests
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run: |
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conda activate pymc-test-py37
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python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 $TEST_SUBSET
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v2
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with:
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env_vars: TEST_SUBSET
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name: ${{ matrix.os }} ${{ matrix.floatx }}
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fail_ci_if_error: false
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windows:
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strategy:
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matrix:
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os: [windows-latest]
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floatx: [float32, float64]
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fail-fast: false
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runs-on: ${{ matrix.os }}
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env:
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TEST_SUBSET: ${{ matrix.test-subset }}
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AESARA_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=core2'
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defaults:
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run:
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shell: cmd
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steps:
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- uses: actions/checkout@v2
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- name: Cache conda
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uses: actions/cache@v1
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env:
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# Increase this value to reset cache if conda-envs/environment-test-py38.yml has not changed
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CACHE_NUMBER: 0
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with:
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path: ~/conda_pkgs_dir
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key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
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hashFiles('conda-envs/windows-environment-test-py38.yml') }}
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- name: Cache multiple paths
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uses: actions/cache@v2
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env:
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# Increase this value to reset cache if requirements.txt has not changed
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CACHE_NUMBER: 0
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with:
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path: |
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~/.cache/pip
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$RUNNER_TOOL_CACHE/Python/*
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~\AppData\Local\pip\Cache
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key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{
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hashFiles('requirements.txt') }}
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- uses: conda-incubator/setup-miniconda@v2
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with:
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miniforge-variant: Mambaforge
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miniforge-version: latest
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mamba-version: "*"
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activate-environment: pymc-test-py38
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channel-priority: strict
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environment-file: conda-envs/windows-environment-test-py38.yml
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use-mamba: true
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use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
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- name: Install-pymc
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run: |
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conda activate pymc-test-py38
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pip install -e .
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python --version
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- name: Run tests
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# This job uses a cmd shell, therefore the environment variable syntax is different!
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# The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682).
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run: >-
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conda activate pymc-test-py38 &&
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python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 %TEST_SUBSET%
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v2
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with:
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env_vars: TEST_SUBSET
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name: ${{ matrix.os }} ${{ matrix.floatx }}
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fail_ci_if_error: false

‎pyproject.toml‎

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[tool.pytest.ini_options]
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minversion = "6.0"
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xfail_strict=true
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[tool.black]
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line-length = 100
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[tool.coverage.report]
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exclude_lines = [
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"pragma: nocover",
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"raise NotImplementedError",
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"if TYPE_CHECKING:",
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]
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[tool.nbqa.mutate]
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isort = 1
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black = 1
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pyupgrade = 1

‎setupegg.py‎

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# Copyright 2020 The PyMC Developers
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#!/usr/bin/env python
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"""
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A setup.py script to use setuptools, which gives egg goodness, etc.
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"""
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from setuptools import setup
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with open("setup.py") as s:
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exec(s.read())

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