Merge branch 'main' into patch-2

Author: dxdc

.github/workflows/broken-linkcheck.yml

@@ -6,7 +6,7 @@ on:
 
 jobs:
   cleanup:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     if: github.repository_owner == 'pandas-dev'
     permissions:
       actions: write

.github/workflows/cache-cleanup-daily.yml

@@ -6,7 +6,8 @@ on:
 
 jobs:
   cleanup:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
+    if: github.repository_owner == 'pandas-dev'
     steps:
       - name: Clean Cache
         run: |

.github/workflows/cache-cleanup.yml

@@ -28,8 +28,8 @@ jobs:
 
     steps:
       - uses: actions/checkout@v5
-      - uses: github/codeql-action/init@v3
+      - uses: github/codeql-action/init@v4
         with:
           languages: ${{ matrix.language }}
-      - uses: github/codeql-action/autobuild@v3
-      - uses: github/codeql-action/analyze@v3
+      - uses: github/codeql-action/autobuild@v4
+      - uses: github/codeql-action/analyze@v4

.github/workflows/codeql.yml

@@ -9,15 +9,6 @@ permissions:
   pull-requests: write
 
 jobs:
-  issue_assign:
-    runs-on: ubuntu-24.04
-    if: (!github.event.issue.pull_request) && github.event.comment.body == 'take'
-    concurrency:
-      group: ${{ github.actor }}-issue-assign
-    steps:
-      - run: |
-          echo "Assigning issue ${{ github.event.issue.number }} to ${{ github.event.comment.user.login }}"
-          curl -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -d '{"assignees": ["${{ github.event.comment.user.login }}"]}' https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.issue.number }}/assignees
   preview_docs:
     runs-on: ubuntu-24.04
     if: github.event.issue.pull_request && github.event.comment.body == '/preview'
@@ -28,64 +19,3 @@ jobs:
         with:
           previewer-server: "https://pandas.pydata.org/preview"
           artifact-job: "Doc Build and Upload"
-  asv_run:
-    runs-on: ubuntu-24.04
-    # TODO: Support more benchmarking options later, against different branches, against self, etc
-    if: github.event.issue.pull_request && startsWith(github.event.comment.body, '@github-actions benchmark')
-    defaults:
-      run:
-        shell: bash -el {0}
-    env:
-      ENV_FILE: environment.yml
-      COMMENT: ${{github.event.comment.body}}
-
-    concurrency:
-      # Set concurrency to prevent abuse(full runs are ~5.5 hours !!!)
-      # each user can only run one concurrent benchmark bot at a time
-      # We don't cancel in progress jobs, but if you want to benchmark multiple PRs, you're gonna have
-      # to wait
-      group: ${{ github.actor }}-asv
-      cancel-in-progress: false
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: 0
-
-        # Although asv sets up its own env, deps are still needed
-        # during discovery process
-      - name: Set up Conda
-        uses: ./.github/actions/setup-conda
-
-      - name: Run benchmarks
-        id: bench
-        continue-on-error: true # asv will exit code 1 for regressions
-        run: |
-          # extracting the regex, see https://stackoverflow.com/a/36798723
-          REGEX=$(echo "$COMMENT" | sed -n "s/^.*-b\s*\(\S*\).*$/\1/p")
-          cd asv_bench
-          asv check -E existing
-          git remote add upstream https://github.com/pandas-dev/pandas.git
-          git fetch upstream
-          asv machine --yes
-          asv continuous -f 1.1 -b $REGEX upstream/main HEAD
-          echo 'BENCH_OUTPUT<<EOF' >> $GITHUB_ENV
-          asv compare -f 1.1 upstream/main HEAD >> $GITHUB_ENV
-          echo 'EOF' >> $GITHUB_ENV
-          echo "REGEX=$REGEX" >> $GITHUB_ENV
-
-      - uses: actions/github-script@v8
-        env:
-          BENCH_OUTPUT: ${{env.BENCH_OUTPUT}}
-          REGEX: ${{env.REGEX}}
-        with:
-          script: |
-            const ENV_VARS = process.env
-            const run_url = `https://github.com/${context.repo.owner}/${context.repo.repo}/actions/runs/${context.runId}`
-            github.rest.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: '\nBenchmarks completed. View runner logs here.' + run_url + '\nRegex used: '+ 'regex ' + ENV_VARS["REGEX"] + '\n' + ENV_VARS["BENCH_OUTPUT"]
-            })

.github/workflows/comment-commands.yml

@@ -93,7 +93,7 @@ jobs:
       run: mv doc/build/html web/build/docs
 
     - name: Save website as an artifact
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v5
       with:
         name: website
         path: web/build

.github/workflows/docbuild-and-upload.yml

@@ -181,8 +181,7 @@ jobs:
     timeout-minutes: 90
     strategy:
       matrix:
-        # Note: Don't use macOS latest since macos 14 appears to be arm64 only
-        os: [macos-13, macos-14, windows-latest]
+        os: [macos-15-intel, macos-15, windows-2025]
         env_file: [actions-311.yaml, actions-312.yaml, actions-313.yaml]
       fail-fast: false
     runs-on: ${{ matrix.os }}
@@ -322,7 +321,7 @@ jobs:
       fail-fast: false
       matrix:
         # Separate out macOS 13 and 14, since macOS 14 is arm64 only
-        os: [ubuntu-24.04, macOS-13, macOS-14, windows-latest]
+        os: [ubuntu-24.04, macOS-13, macOS-14, windows-2025]
 
     timeout-minutes: 90
 
@@ -399,7 +398,7 @@ jobs:
           pyodide build
 
       - name: Set up Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: '20'
 

.github/workflows/unit-tests.yml

@@ -64,7 +64,7 @@ jobs:
           python -m pip install build
           python -m build --sdist
 
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: sdist
           path: ./dist/*
@@ -98,10 +98,9 @@ jobs:
         - [ubuntu-24.04, musllinux_x86_64]
         - [ubuntu-24.04-arm, manylinux_aarch64]
         - [ubuntu-24.04-arm, musllinux_aarch64]
-        - [macos-13, macosx_x86_64]
-        # Note: M1 images on Github Actions start from macOS 14
-        - [macos-14, macosx_arm64]
-        - [windows-2022, win_amd64]
+        - [macos-15-intel, macosx_x86_64]
+        - [macos-15, macosx_arm64]
+        - [windows-2025, win_amd64]
         - [windows-11-arm, win_arm64]
         python: [["cp311", "3.11"], ["cp312", "3.12"], ["cp313", "3.13"], ["cp313t", "3.13"], ["cp314", "3.14"], ["cp314t", "3.14"]]
         include:
@@ -139,7 +138,7 @@ jobs:
       # removes unnecessary files from the release
       - name: Download sdist (not macOS)
         #if: ${{ matrix.buildplat[1] != 'macosx_*' }}
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
         with:
           name: sdist
           path: ./dist
@@ -162,7 +161,7 @@ jobs:
         run: echo "sdist_name=$(cd ./dist && ls -d */)" >> "$GITHUB_ENV"
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v3.2.0
+        uses: pypa/cibuildwheel@v3.2.1
         with:
          package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
         env:
@@ -197,7 +196,7 @@ jobs:
         shell: bash -el {0}
         run: for whl in $(ls wheelhouse); do wheel unpack wheelhouse/$whl -d /tmp; done
 
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
           path: ./wheelhouse/*.whl
@@ -229,7 +228,7 @@ jobs:
       - build_sdist
       - build_wheels
 
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
 
     environment:
       name: pypi
@@ -239,10 +238,12 @@ jobs:
 
     steps:
       - name: Download all artefacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
         with:
           path: dist          # everything lands in ./dist/**
 
+      # TODO: This step can be probably be achieved by actions/download-artifact@v6
+      # by specifying merge-multiple: true, and a glob pattern
       - name: Collect files
         run: |
           mkdir -p upload

.github/workflows/wheels.yml

@@ -19,7 +19,7 @@ ci:
     skip: [pyright, mypy]
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.11
+    rev: v0.13.3
     hooks:
     -   id: ruff
         args: [--exit-non-zero-on-fix]
@@ -46,7 +46,7 @@ repos:
     -   id: codespell
         types_or: [python, rst, markdown, cython, c]
 -   repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.7
+    rev: v0.17.0
     hooks:
     -   id: cython-lint
     -   id: double-quote-cython-strings
@@ -67,7 +67,7 @@ repos:
     -   id: trailing-whitespace
         args: [--markdown-linebreak-ext=md]
 -   repo: https://github.com/PyCQA/isort
-    rev: 6.0.1
+    rev: 6.1.0
     hooks:
     -   id: isort
 -   repo: https://github.com/asottile/pyupgrade
@@ -92,14 +92,14 @@ repos:
     - id: sphinx-lint
       args: ["--enable", "all", "--disable", "line-too-long"]
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v21.1.0
+    rev: v21.1.2
     hooks:
     - id: clang-format
       files: ^pandas/_libs/src|^pandas/_libs/include
       args: [-i]
       types_or: [c, c++]
 -   repo: https://github.com/trim21/pre-commit-mirror-meson
-    rev: v1.9.0
+    rev: v1.9.1
     hooks:
     - id: meson-fmt
       args: ['--inplace']

.pre-commit-config.yaml

@@ -23,7 +23,7 @@ def gen_of_str(arr):
 
 
 def arr_dict(arr):
-    return dict(zip(range(len(arr)), arr))
+    return dict(zip(range(len(arr)), arr, strict=True))
 
 
 def list_of_tuples(arr):