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Merge pull request #29 from ghisvail/ci/publish-workflow
[CI] Add workflow to publish on release
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‎.editorconfig‎

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# EditorConfig <editorconfig.org>
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# This is the top-most EditorConfig file.
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root = true
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# Use Unix-style newlines with a newline ending for all files.
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[*]
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end_of_line = lf
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insert_final_newline = true
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# Use 4-space indentation for Python.
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[*.py]
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indent_size = 4
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indent_style = space
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# Use 2-space indentation for YAML.
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[*.{yml,yaml}]
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indent_size = 2
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indent_style = space

‎.github/workflows/publish.yml‎

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name: publish
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on:
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# Trigger this workflow when a release is created.
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release:
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types:
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- published
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permission:
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# Allow checkout of the project.
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contents: read
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env:
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# Default Python version on which jobs are run.
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DEFAULT_PYTHON_VERSION: '3.9'
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jobs:
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publish:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/setup-python@v4
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with:
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python-version: ${{ env.DEFAULT_PYTHON_VERSION }}
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- name: Install build frontend
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run: python -m pip install build
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- name: Build distribution package
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run: python -m build
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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password: ${{ secrets.PYPI_API_TOKEN }}

‎.github/workflows/pythonpackage.yml‎

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on:
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push:
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branches: [ main ]
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tags: [ '*' ]
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pull_request:
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branches: [ main ]
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ['3.7', '3.11'] # Check oldest and newest versions
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pip-flags: ['', '--editable']
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python-version: [ '3.7', '3.11' ] # Check oldest and newest versions
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pip-flags: [ '', '--editable' ]
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pydra:
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- 'pydra'
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- '--editable git+https://github.com/nipype/pydra.git#egg=pydra'
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- 'pydra'
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- '--editable git+https://github.com/nipype/pydra.git#egg=pydra'
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install build dependencies
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run: |
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python -m pip install --upgrade pip
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- name: Install Pydra
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run: |
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pip install ${{ matrix.pydra }}
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- name: Install task package
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run: |
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pip install ${{ matrix.pip-flags }} ".[dev]"
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python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install build dependencies
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run: |
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python -m pip install --upgrade pip
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- name: Install Pydra
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run: |
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pip install ${{ matrix.pydra }}
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- name: Install task package
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run: |
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pip install ${{ matrix.pip-flags }} ".[dev]"
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python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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test:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
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python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ]
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Set up NeuroDebian
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run: bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
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- name: Install FSL
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run: sudo apt-get install -y fsl
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- name: Install build dependencies
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run: |
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python -m pip install --upgrade pip
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- name: Install task package
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run: |
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pip install ".[test]"
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python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- name: Test with pytest
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run: |
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source /etc/fsl/fsl.sh
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pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \
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--cov pydra.tasks.$SUBPACKAGE --cov-report xml
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- uses: codecov/codecov-action@v1
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if: ${{ always() }}
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Set up NeuroDebian
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run: bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
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- name: Install FSL
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run: sudo apt-get install -y fsl
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- name: Install build dependencies
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run: |
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python -m pip install --upgrade pip
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- name: Install task package
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run: |
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pip install ".[test]"
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python -c "import pydra.tasks.$SUBPACKAGE as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- name: Test with pytest
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run: |
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source /etc/fsl/fsl.sh
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pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \
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--cov pydra.tasks.$SUBPACKAGE --cov-report xml
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- uses: codecov/codecov-action@v1
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if: ${{ always() }}
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deploy:
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needs: [devcheck, test]
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needs: [ devcheck, test ]
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.9]
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python-version: [ '3.9' ]
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steps:
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- uses: actions/checkout@v2
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with:
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submodules: recursive
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fetch-depth: 0
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install build tools
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run: python -m pip install build twine
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- name: Build source and wheel distributions
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run: python -m build
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- name: Check distributions
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run: twine check dist/*
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- uses: actions/upload-artifact@v2
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with:
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name: distributions
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path: dist/
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# Deploy on tags if PYPI_API_TOKEN is defined in the repository secrets.
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# Secrets are not accessible in the if: condition [0], so set an output variable [1]
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# [0] https://github.community/t/16928
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# [1] https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-output-parameter
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- name: Check for PyPI token on tag
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id: deployable
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if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
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env:
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PYPI_API_TOKEN: "${{ secrets.PYPI_API_TOKEN }}"
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run: if [ -n "$PYPI_API_TOKEN" ]; then echo ::set-output name=DEPLOY::true; fi
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- name: Upload to PyPI
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if: steps.deployable.outputs.DEPLOY
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uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29 # v1.4.2
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with:
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user: __token__
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password: ${{ secrets.PYPI_API_TOKEN }}
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- uses: actions/checkout@v2
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with:
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submodules: recursive
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fetch-depth: 0
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install build tools
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run: python -m pip install build twine
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- name: Build source and wheel distributions
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run: python -m build
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- name: Check distributions
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run: twine check dist/*
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- uses: actions/upload-artifact@v2
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with:
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name: distributions
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path: dist/

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