Merge pull request #1255 from miykael/master

FIX: PEP8 correction for all error E100-E399

Author: satra

build_docs.py

@@ -29,18 +29,20 @@
 
 ################################################################################
 # Distutils Command class for installing nipype to a temporary location.
+
+
 class TempInstall(Command):
     temp_install_dir = os.path.join('build', 'install')
 
     def run(self):
         """ build and install nipype in a temporary location. """
         install = self.distribution.get_command_obj('install')
         install.install_scripts = self.temp_install_dir
-        install.install_base    = self.temp_install_dir
+        install.install_base = self.temp_install_dir
         install.install_platlib = self.temp_install_dir
         install.install_purelib = self.temp_install_dir
-        install.install_data    = self.temp_install_dir
-        install.install_lib     = self.temp_install_dir
+        install.install_data = self.temp_install_dir
+        install.install_lib = self.temp_install_dir
         install.install_headers = self.temp_install_dir
         install.run()
 
@@ -64,13 +66,12 @@ def finalize_options(self):
 # Distutils Command class for API generation
 class APIDocs(TempInstall):
     description = \
-    """generate API docs """
+        """generate API docs """
 
     user_options = [
         ('None', None, 'this command has no options'),
         ]
 
-
     def run(self):
         # First build the project and install it to a temporary location.
         TempInstall.run(self)
@@ -141,22 +142,21 @@ def zip_docs(self):
             # require zlib.
             try:
                 zf = zipfile.ZipFile(target_file, 'w',
-                                            compression=zipfile.ZIP_DEFLATED)
+                                     compression=zipfile.ZIP_DEFLATED)
             except RuntimeError:
                 warnings.warn('zlib not installed, storing the docs '
-                                'without compression')
+                              'without compression')
                 zf = zipfile.ZipFile(target_file, 'w',
-                                            compression=zipfile.ZIP_STORED)
+                                     compression=zipfile.ZIP_STORED)
 
             for root, dirs, files in os.walk(DOC_BUILD_DIR):
                 relative = relative_path(root)
                 if not relative.startswith('.doctrees'):
                     for f in files:
                         zf.write(os.path.join(root, f),
-                                os.path.join(relative, 'html_docs', f))
+                                 os.path.join(relative, 'html_docs', f))
             zf.close()
 
-
         def finalize_options(self):
             """ Override the default for the documentation build
                 directory.
@@ -166,6 +166,8 @@ def finalize_options(self):
 
 ################################################################################
 # Distutils Command class to clean
+
+
 class Clean(clean):
 
     def run(self):

doc/conf.py

@@ -15,7 +15,7 @@
 import sys, os
 
 nipypepath = os.path.abspath('..')
-sys.path.insert(1,nipypepath)
+sys.path.insert(1, nipypepath)
 
 import nipype
 
@@ -168,9 +168,9 @@
 #html_use_smartypants = True
 
 # Custom sidebar templates, maps document names to template names.
-html_sidebars = {'**': ['gse.html','localtoc.html', 'sidebar_versions.html', 'indexsidebar.html'],
-                 'searchresults' : ['sidebar_versions.html', 'indexsidebar.html'],
-                 'version' : []}
+html_sidebars = {'**': ['gse.html', 'localtoc.html', 'sidebar_versions.html', 'indexsidebar.html'],
+                 'searchresults': ['sidebar_versions.html', 'indexsidebar.html'],
+                 'version': []}
 
 # Additional templates that should be rendered to pages, maps page names to
 # template names.

doc/sphinxext/autosummary_generate.py

@@ -26,6 +26,7 @@
 except ImportError:
     import_phantom_module = lambda x: x
 
+
 def main():
     p = optparse.OptionParser(__doc__.strip())
     p.add_option("-p", "--phantom", action="store", type="string",
@@ -95,16 +96,19 @@ def main():
         finally:
             f.close()
 
+
 def format_modulemember(name, directive):
     parts = name.split('.')
     mod, name = '.'.join(parts[:-1]), parts[-1]
     return ".. currentmodule:: %s\n\n.. %s:: %s\n" % (mod, directive, name)
 
+
 def format_classmember(name, directive):
     parts = name.split('.')
     mod, name = '.'.join(parts[:-2]), '.'.join(parts[-2:])
     return ".. currentmodule:: %s\n\n.. %s:: %s\n" % (mod, directive, name)
 
+
 def get_documented(filenames):
     """
     Find out what items are documented in source/*.rst
@@ -119,6 +123,7 @@ def get_documented(filenames):
         f.close()
     return documented
 
+
 def get_documented_in_docstring(name, module=None, filename=None):
     """
     Find out what items are documented in the given object's docstring.
@@ -135,6 +140,7 @@ def get_documented_in_docstring(name, module=None, filename=None):
         print("Failed to import '%s': %s" % (name, e))
     return {}
 
+
 def get_documented_in_lines(lines, module=None, filename=None):
     """
     Find out what items are documented in the given lines
@@ -173,7 +179,7 @@ def get_documented_in_lines(lines, module=None, filename=None):
                     continue
 
                 if line.strip().startswith(':'):
-                    continue # skip options
+                    continue  # skip options
 
                 m = autosummary_item_re.match(line)
                 if m:

doc/sphinxext/ipython_console_highlighting.py

@@ -3,7 +3,7 @@
 """reST directive for syntax-highlighting ipython interactive sessions.
 """
 
-#-----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------
 # Needed modules
 
 # Standard library
@@ -18,13 +18,14 @@
 from sphinx import highlighting
 
 
-#-----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------
 # Global constants
 line_re = re.compile('.*?\n')
 
-#-----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------
 # Code begins - classes and functions
 
+
 class IPythonConsoleLexer(Lexer):
     """
     For IPython console output or doctests, such as:
@@ -95,6 +96,6 @@ def get_tokens_unprocessed(self, text):
                                       pylexer.get_tokens_unprocessed(curcode)):
                 yield item
 
-#-----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------
 # Register the extension as a valid pygments lexer
 highlighting.lexers['ipython'] = IPythonConsoleLexer()