@@ -192,9 +192,7 @@ class DWIBiasCorrectInputSpec(MRTrix3BaseInputSpec):
192192 mandatory = True ,
193193 desc = "input DWI image" ,
194194 )
195- in_mask = File (
196- argstr = "-mask %s" , desc = "input mask image for bias field estimation"
197- )
195+ in_mask = File (argstr = "-mask %s" , desc = "input mask image for bias field estimation" )
198196 use_ants = traits .Bool (
199197 argstr = "ants" ,
200198 mandatory = True ,
@@ -412,9 +410,7 @@ def _list_outputs(self):
412410 outputs = self .output_spec ().get ()
413411 outputs ["out_file" ] = op .abspath (self .inputs .out_file )
414412 if self .inputs .export_grad_mrtrix :
415- outputs ["out_grad_mrtrix" ] = op .abspath (
416- self .inputs .out_grad_mrtrix
417- )
413+ outputs ["out_grad_mrtrix" ] = op .abspath (self .inputs .out_grad_mrtrix )
418414 if self .inputs .export_grad_fsl :
419415 outputs ["out_fsl_bvec" ] = op .abspath (self .inputs .out_grad_fsl [0 ])
420416 outputs ["out_fsl_bval" ] = op .abspath (self .inputs .out_grad_fsl [1 ])
@@ -448,15 +444,9 @@ class ResponseSDInputSpec(MRTrix3BaseInputSpec):
448444 usedefault = True ,
449445 desc = "output WM response text file" ,
450446 )
451- gm_file = File (
452- argstr = "%s" , position = - 2 , desc = "output GM response text file"
453- )
454- csf_file = File (
455- argstr = "%s" , position = - 1 , desc = "output CSF response text file"
456- )
457- in_mask = File (
458- exists = True , argstr = "-mask %s" , desc = "provide initial mask image"
459- )
447+ gm_file = File (argstr = "%s" , position = - 2 , desc = "output GM response text file" )
448+ csf_file = File (argstr = "%s" , position = - 1 , desc = "output CSF response text file" )
449+ in_mask = File (exists = True , argstr = "-mask %s" , desc = "provide initial mask image" )
460450 max_sh = InputMultiObject (
461451 traits .Int ,
462452 argstr = "-lmax %s" ,
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