@@ -73,12 +73,8 @@ class ExtractAdditionalSurfaceParameters(SPMCommand):
7373 >>> # Set the left surface files, both will be processed
7474 >>> lh_path_central = 'lh.central.structural.gii'
7575 >>> # Put here all surface files generated by CAT12 Segment, this is only required if the this approach is putted in
76- >>> surf_files = ["lh.sphere.reg.structural.gii", "rh.sphere.reg.structural.gii", \
77- "lh.sphere.structural.gii", "rh.sphere.structural.gii", \
78- 'rh.central.structural.gii', \
79- 'lh.pbt.structural', 'rh.pbt.structural']
80- >>> extract_additional_measures = ExtractAdditionalSurfaceParameters(left_central_surfaces=lh_path_central, \
81- surface_files=surf_files)
76+ >>> surf_files = ['lh.sphere.reg.structural.gii', 'rh.sphere.reg.structural.gii', 'lh.sphere.structural.gii', 'rh.sphere.structural.gii', 'rh.central.structural.gii', 'lh.pbt.structural', 'rh.pbt.structural']
77+ >>> extract_additional_measures = ExtractAdditionalSurfaceParameters(left_central_surfaces=lh_path_central, surface_files=surf_files)
8278 >>> extract_additional_measures.run() # doctest: +SKIP
8379
8480 """
@@ -166,21 +162,11 @@ class ExtractROIBasedSurfaceMeasures(SPMCommand):
166162 Examples
167163 --------
168164 >>> # Template surface files
169- >>> lh_atlas = "lh.aparc_a2009s.freesurfer.annot"
170- >>> rh_atlas = "rh.aparc_a2009s.freesurfer.annot"
171-
172- >>> # Put here all surface files generated by CAT12 Segment, this is only required if the this approach is putted in a Node
173- >>> surf_files = ["lh.sphere.reg.structural.gii", "rh.sphere.reg.structural.gii", \
174- "lh.sphere.structural.gii", "rh.sphere.structural.gii", \
175- 'lh.central.structural.gii', 'rh.central.structural.gii', \
176- 'lh.pbt.structural', 'rh.pbt.structural']
177- # Set the path to the left hemisphere measure file, both will be processed
178- >>> lh_measure = "lh.area.structural"
179-
180- >>> extract_additional_measures = ExtractROIBasedSurfaceMeasures(surface_files=surf_files, \
181- lh_surface_measure=lh_measure, \
182- lh_roi_atlas=lh_atlas, \
183- rh_roi_atlas=rh_atlas)
165+ >>> lh_atlas = 'lh.aparc_a2009s.freesurfer.annot'
166+ >>> rh_atlas = 'rh.aparc_a2009s.freesurfer.annot'
167+ >>> surf_files = ['lh.sphere.reg.structural.gii', 'rh.sphere.reg.structural.gii', 'lh.sphere.structural.gii', 'rh.sphere.structural.gii', 'lh.central.structural.gii', 'rh.central.structural.gii', 'lh.pbt.structural', 'rh.pbt.structural']
168+ >>> lh_measure = 'lh.area.structural'
169+ >>> extract_additional_measures = ExtractROIBasedSurfaceMeasures(surface_files=surf_files, lh_surface_measure=lh_measure, lh_roi_atlas=lh_atlas, rh_roi_atlas=rh_atlas)
184170 >>> extract_additional_measures.run() # doctest: +SKIP
185171
186172
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