FIX: BAMaps stats files now datasink to the correct location.

Author: David Ellis

nipype/workflows/smri/freesurfer/ba_maps.py

@@ -34,19 +34,19 @@ def create_ba_maps_wf(name="Brodmann_Area_Maps", th3=True):
 
     ba_WF = pe.Workflow(name=name)
 
-    ba_outputs = ['lh_table',
+    ba_outputs = ['lh_BAMaps_stats',
                   'lh_color',
                   'lh_BAMaps_labels',
                   'lh_BAMaps_annotation',
-                  'lh_thresh_table',
+                  'lh_thresh_BAMaps_stats',
                   'lh_thresh_color',
                   'lh_thresh_BAMaps_labels',
                   'lh_thresh_BAMaps_annotation',
-                  'rh_table',
+                  'rh_BAMaps_stats',
                   'rh_color',
                   'rh_BAMaps_labels',
                   'rh_BAMaps_annotation',
-                  'rh_thresh_table',
+                  'rh_thresh_BAMaps_stats',
                   'rh_thresh_color',
                   'rh_thresh_BAMaps_labels',
                   'rh_thresh_BAMaps_annotation']
@@ -118,7 +118,7 @@ def create_ba_maps_wf(name="Brodmann_Area_Maps", th3=True):
                 ba_WF.connect([(stats_node, outputspec, [('out_color',
                                                           '{0}_thresh_color'.format(hemisphere)),
                                                          ('out_table',
-                                                          '{0}_thresh_table'.format(hemisphere))]),
+                                                          '{0}_thresh_BAMaps_stats'.format(hemisphere))]),
                                (label2annot, outputspec,
                                 [('out_file', '{0}_thresh_BAMaps_annotation'.format(hemisphere))]),
                                (node, outputspec,
@@ -128,7 +128,7 @@ def create_ba_maps_wf(name="Brodmann_Area_Maps", th3=True):
                 ba_WF.connect([(stats_node, outputspec, [('out_color',
                                                           '{0}_color'.format(hemisphere)),
                                                          ('out_table',
-                                                          '{0}_table'.format(hemisphere))]),
+                                                          '{0}_BAMaps_stats'.format(hemisphere))]),
                                (label2annot, outputspec,
                                 [('out_file', '{0}_BAMaps_annotation'.format(hemisphere))]),
                                (node, outputspec, [('out_file',

nipype/workflows/smri/freesurfer/recon.py

@@ -466,13 +466,13 @@ def getDSTransformPath(subjects_dir, subject_id):
                                               ('rh_wg_pct_stats', 'stats.@rh_wg_pct_stats'),
                                               ('lh_pctsurfcon_log', 'log.@lh_pctsurfcon_log'),
                                               ('rh_pctsurfcon_log', 'log.@rh_pctsurfcon_log'),
-                                              ('lh_table', 'label.@lh_table'),
+                                              ('lh_BAMaps_stats', 'stats.@lh_BAMaps_stats'),
                                               ('lh_color', 'label.@lh_color'),
-                                              ('lh_thresh_table', 'label.@lh_thresh_table'),
+                                              ('lh_thresh_BAMaps_stats', 'stats.@lh_thresh_BAMaps_stats'),
                                               ('lh_thresh_color', 'label.@lh_thresh_color'),
-                                              ('rh_table', 'label.@rh_table'),
+                                              ('rh_BAMaps_stats', 'stats.@rh_BAMaps_stats'),
                                               ('rh_color', 'label.@rh_color'),
-                                              ('rh_thresh_table', 'label.@rh_thresh_table'),
+                                              ('rh_thresh_BAMaps_stats', 'stats.@rh_thresh_BAMaps_stats'),
                                               ('rh_thresh_color', 'label.@rh_thresh_color'),
                                               ('lh_BAMaps_labels', 'label.@lh_BAMaps_labels'),
                                               ('lh_thresh_BAMaps_labels', 'label.@lh_thresh_BAMaps_labels'),