|
165 | 165 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
166 | 166 | \item Developer friendly libraries for Python and Java |
167 | 167 | \item Fully functional graphical editor for Linux, Windows, and MacOS~X |
168 | | -\item Support for the latest odML specification |
| 168 | +%\item Support for the latest odML specification |
169 | 169 | \end{itemize} |
170 | 170 |
|
171 | 171 | \vspace{0.5em} |
|
189 | 189 |
|
190 | 190 | LFPy provides: |
191 | 191 | \begin{itemize}[nolistsep, topsep=0em, leftmargin=1pc] |
192 | | -\item A forward modeling scheme for calculating extracellular potentials from compartmental membrane currents in an infinite homogeneous linear extracellular medium. |
193 | | -\item Simple to use Python-classes for setting up cells, synapses and recording electrodes. |
194 | | -\item Easy to use scripting capabilities thanks to NEURON and the Python programming environment. |
195 | | -\item Functionality to employ or specify biophysically detailed model neurons, add a stimulus, and perform a simultaneous simulation of the model cell responses and extracellular potentials. |
196 | | -\item Support for common formats for reconstructed neuronal morphologies, allowing use of publicly available 3D-reconstructions (e.g., \url{http://www.neuromorpho.org}). |
| 192 | +\item A forward modeling scheme for calculating extracellular |
| 193 | + potentials from compartmental membrane currents in an infinite |
| 194 | + homogeneous linear extracellular medium |
| 195 | +\item Python-classes for setting up cells, synapses and recording |
| 196 | + electrodes |
| 197 | +\item Scripting capabilities thanks to NEURON and the |
| 198 | + Python programming environment |
| 199 | +\item Simultaneous simulation of the model cell responses and |
| 200 | + extracellular potentials based on a biophysically detailed neuronal |
| 201 | + model |
| 202 | +\item Support for common formats for reconstructed neuronal |
| 203 | + morphologies, allowing use of publicly available 3D-reconstructions |
| 204 | + (\emph{e.g.}, \url{http://www.neuromorpho.org}). |
197 | 205 | \end{itemize} |
198 | 206 |
|
199 | 207 |
|
|
214 | 222 | MNE is a software package for processing magnetoencephalography (MEG) and electroencephalography (EEG) data. |
215 | 223 | (\url{http://www.martinos.org/mne}) |
216 | 224 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
217 | | -\item Includes MEG and EEG preprocessing tools |
218 | | -\item Includes various data conditioning and data conversion utilities. |
| 225 | +%\item MEG and EEG preprocessing tools |
| 226 | +\item Data conditioning and data conversion utilities |
219 | 227 | \item Interactive and batch-mode modules for the forward and inverse calculations |
220 | | -\item Computes cortically-constrained source estimates |
221 | | -\item Computes associated dynamic statistical parametric maps, optionally constrained by fMRI |
222 | | -\item Includes frequency-domain and time-frequency analyses and non-parametric statistics |
223 | | -\item Includes multi-variate statistics (decoding) |
| 228 | +\item Cortically-constrained source estimates |
| 229 | +\item Associated dynamic statistical parametric maps, optionally constrained by fMRI |
| 230 | +\item Frequency-domain and time-frequency analyses, non-parametric |
| 231 | + statistics, multivariate decoding |
224 | 232 | \end{itemize} |
225 | 233 |
|
226 | 234 | \vspace{1em} |
227 | 235 | \includegraphics[width=\columnwidth]{mne_screenshot.pdf} |
228 | 236 | % Selected set of citations, Here is an example: |
229 | | -\ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, MNE software for processing MEG and EEG data, NeuroImage, Volume 86, 1 February 2014, Pages 446-460, ISSN 1053-8119, http://dx.doi.org/10.1016/j.neuroimage.2013.10.027} |
230 | | -\ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, R. Goj, M. Jas, T. Brooks, L. Parkkonen, M. Hämäläinen, MEG and EEG data analysis with MNE-Python, Frontiers in Neuroscience, Volume 7, 2013, ISSN 1662-453X, http://dx.doi.org/10.3389/fnins.2013.00267} |
| 237 | +\ndcite{A. Gramfort, \emph{et.~al.} |
| 238 | +% M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, |
| 239 | +MNE software for processing MEG and EEG data, NeuroImage, Volume 86, 1 February 2014, Pages 446-460, ISSN 1053-8119, http://dx.doi.org/10.1016/j.neuroimage.2013.10.027} |
| 240 | +% \ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, R. Goj, M. Jas, T. Brooks, L. Parkkonen, M. Hämäläinen, MEG and EEG data analysis with MNE-Python, Frontiers in Neuroscience, Volume 7, 2013, ISSN 1662-453X, http://dx.doi.org/10.3389/fnins.2013.00267} |
231 | 241 |
|
232 | 242 |
|
233 | 243 | %________________________Stimfit____________________________________________ |
|
320 | 330 | \item Live camera viewing for patching and online analysis of calcium imaging |
321 | 331 | \item Modular and scalable design -- easy to expand support for new hardware and experiments |
322 | 332 | \item Integrated data manager for hierarchical data storage with annotations and other metadata |
323 | | -\item Includes extensive set of analysis tools |
| 333 | +%\item Includes extensive set of analysis tools |
324 | 334 | \end{itemize} |
325 | 335 |
|
326 | 336 | \vspace{1em} |
|
0 commit comments