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127 | 127 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
128 | 128 | \item Powerful GUI |
129 | 129 | \item Collection of methods for spike sorting |
130 | | -\item Wavelet method for analyzing transient oscillations in LFP |
| 130 | +\item Wavelet method for LFP transient oscillations analysis |
131 | 131 | \item Customisable database to organize datasets |
132 | 132 | \end{itemize} |
133 | 133 |
|
| 134 | +\vspace{0.5em} |
134 | 135 | \includegraphics[width=\columnwidth]{OpenElectrophy_screenshot1.png} |
135 | 136 |
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136 | 137 | %___________________________________________________________________________ |
137 | 138 |
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138 | 139 |
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139 | 140 | %________________________G-Node Data API Python Client______________________ |
140 | 141 | \ndsection{Data Management} |
141 | | -\ndproject{G-Node Data API Python Client}{http://g-node.github.com/python-gnode-client}{gnode_logo.pdf}{.25}{-0.25em}{0em} |
142 | 142 |
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143 | | -G-Node provides a free cloud-based service neuroscientists can use for storage, management and sharing of data (\url{https://portal.g-node.org/data/}). An API for data access is provided (\url{http://g-node.github.com/g-node-portal/}), allowing developers to code their own client. A web-based interface as well as a client for MATLAB\textregistered (\url{http://g-node.github.com/gnode-client-matlab/}) are already provided. A client for Python is currently under development. When completed it shall provide: |
| 143 | +%\ndproject{G-Node Data API Python Client}{http://g-node.github.com/python-gnode-client}{gnode_logo.pdf}{.25}{-0.25em}{0em} |
| 144 | +\ndproject{G-Node Data API Python Client}{http://g-node.github.com}{gnode_logo.pdf}{.25}{-0em}{-1.5em} |
| 145 | + |
| 146 | +\vspace{0.5em} |
| 147 | + |
| 148 | +G-Node provides a free cloud-based service neuroscientists can use for storage, management and sharing of data (\url{https://portal.g-node.org/data/}). An API for data access is provided (\url{http://g-node.github.com/g-node-portal/}), allowing developers to code their own clients. A web-based interface as well as a client for MATLAB$^\textregistered$ (\url{http://g-node.github.com/gnode-client-matlab/}) are already provided. A client for Python is currently under development. When completed it shall provide: |
144 | 149 |
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145 | 150 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
146 | 151 | \item Compatibility with NEO: use it 'out-of-the-box' with existing code written for NEO and gain additional services provided by the G-Node 'for free' |
147 | 152 | \item Smart lazy loading and caching for frugal bandwidth and memory usage |
148 | | -\item Possibility to work in a mixed workflow: work on the same data on Python and MATLAB\textregistered |
| 153 | +\item Possibility to work in a mixed workflow: work on the same data in Python and MATLAB$^\textregistered$ |
149 | 154 | \end{itemize} |
150 | 155 |
|
151 | | -Stay tunned for development updates! |
| 156 | +Stay tuned for development updates! |
152 | 157 |
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153 | 158 | %___________________________________________________________________________ |
154 | 159 | \ndsection{Metadata Management}% |
155 | 160 |
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156 | | -\ndproject{odML libraries \& Editor}{http://www.g-node.org/odml/}{odml_logo.pdf}{.2}{-0.25em}{0em} |
| 161 | +\ndproject{odML libraries \& Editor}{http://www.g-node.org/odml/}{odml_logo.pdf}{.2}{-0.45em}{0em} |
157 | 162 |
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158 | 163 | Use the {open metadata Markup Language} to annotate data with information about the stimulus, data acquisition, and experimental conditions. |
159 | 164 |
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163 | 168 | \item Support for the latest odML specification |
164 | 169 | \end{itemize} |
165 | 170 |
|
| 171 | +\vspace{0.5em} |
166 | 172 | \includegraphics[width=\columnwidth]{odml_editor_screenshot.png} |
167 | 173 |
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168 | 174 | \ndcite{Grewe J, Wachtler T, Benda J (2011) A bottom-up approach to data annotation in neurophysiology. Front. Neuroinform. 5:16. doi:~10.3389/fninf.2011.00016\\} |
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193 | 199 |
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194 | 200 | %___________________________________________________________________________ |
195 | 201 |
|
196 | | -\columnbreak |
197 | 202 | \ndsection{Analysis}% |
198 | 203 |
|
199 | 204 | %________________________Stimfit____________________________________________ |
|
216 | 221 | \item Extracts spontaneous and evoked events |
217 | 222 | \item Successfully used in many publications for >\,5 years |
218 | 223 | \end{itemize} |
219 | | -% Your favorite screenshot placed under ../pics/ |
220 | | -% named as <project>_screenshot.png (optional numbers in suffixes if |
221 | | -% you have multiple to choose from) |
| 224 | + |
| 225 | +\vspace{1em} |
222 | 226 | \includegraphics[width=\columnwidth]{stimfit_screenshot.png} |
223 | 227 | % Selected set of citations, Here is an example: |
224 | 228 | % Working on a manuscript right now ;-) |
|
240 | 244 | \item Easily extensible: Create useful plugins in minutes |
241 | 245 | \item Use supplied plugins for common plots such as Raster Plot, PSTH, Correlogram and analog signals |
242 | 246 | \end{itemize} |
243 | | -% Your favorite screenshot placed under ../pics/ |
244 | | -% named as <project>_screenshot.png (optional numbers in suffixes if |
245 | | -% you have multiple to choose from) |
| 247 | + |
| 248 | +\vspace{1em} |
246 | 249 | \includegraphics[width=\columnwidth]{spykeviewer_screenshot.png} |
247 | 250 | % Selected set of citations, Here is an example: |
248 | 251 | % No publication yet... |
249 | 252 |
|
250 | 253 | %___________________________________________________________________________ |
251 | 254 |
|
| 255 | +\columnbreak |
252 | 256 |
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253 | 257 | %________________________SpikeSort____________________________________________ |
254 | 258 | \ndproject{SpikeSort}{http://spikesort.org}{spikesort_logo.pdf}{.2}{-0.25em}{0em} |
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267 | 271 | \end{itemize} |
268 | 272 | %___________________________________________________________________________ |
269 | 273 |
|
| 274 | +\vspace{1em} |
270 | 275 | \includegraphics[width=\columnwidth]{spikesort_screenshot.png} |
271 | 276 | %\ndsection{Closed-loop Frameworks}% |
272 | 277 |
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