Merge pull request #1044 from DimitriPapadopoulos/codespell

DOC: Typos found by codespell

Author: effigies

Changelog

@@ -122,7 +122,7 @@ New features
 
 Bug fixes
 ---------
-* Delay import of h5py until neded (pr/889) (YOH, reviewed by CM)
+* Delay import of h5py until needed (pr/889) (YOH, reviewed by CM)
 
 Maintenance
 -----------
@@ -168,7 +168,7 @@ Maintenance
 Bug fixes
 ---------
 * Attempt to find versioneer version when building docs (pr/894) (CM)
-* Delay import of h5py until neded (backport of pr/889) (YOH, reviewed by CM)
+* Delay import of h5py until needed (backport of pr/889) (YOH, reviewed by CM)
 
 Maintenance
 -----------
@@ -252,7 +252,7 @@ API changes and deprecations
 ----------------------------
 * Fully remove deprecated ``checkwarns`` and ``minc`` modules. (pr/852) (CM)
 * The ``keep_file_open`` argument to file load operations and ``ArrayProxy``\s
-  no longer acccepts the value ``"auto"``, raising a ``ValueError``. (pr/852)
+  no longer accepts the value ``"auto"``, raising a ``ValueError``. (pr/852)
   (CM)
 * Deprecate ``ArraySequence.data`` in favor of ``ArraySequence.get_data()``,
   which will return a copy. ``ArraySequence.data`` now returns a read-only

doc/source/devel/biaps/biap_0004.rst

@@ -105,7 +105,7 @@ wrapping the `DcmMeta` in the Extension API?
 Status
 ------
 
-Resolved. We now have a seperate `DcmMeta` object which inherits from 
+Resolved. We now have a separate `DcmMeta` object which inherits from 
 `OrderedDict` and contains all of the functionality previously in 
 `DcmMetaExtension` except those related to acting as a Nifti1Extension. 
 The `DcmMetaExtension` now provides just the functionality for being 

doc/source/devel/biaps/biap_0006.rst

@@ -276,7 +276,7 @@ which ends up being similar to the `time_axis_index` option above.
 .. _BV file format overview: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/382-developer-guide-26-file-formats-overview.html
 .. _vmr format definition: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/385-developer-guide-26-the-format-of-vmr-files.html
 .. _STC format definition: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/384-developer-guide-26-the-format-of-stc-files.html
-.. _VTC format defintion: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/379-users-guide-23-the-format-of-vtc-files.html.
+.. _VTC format definition: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/379-users-guide-23-the-format-of-vtc-files.html.
 .. _NR-VMP format definition: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/377-users-guide-23-the-format-of-nr-vmp-files.html;
 .. _AR-VMP format definition: http://support.brainvoyager.com/automation-aamp-development/23-file-formats/376-users-guide-23-the-format-of-ar-vmp-files.html
 .. _SMP format definition: : http://support.brainvoyager.com/automation-aamp-development/23-file-formats/476-the-format-of-smp-files.html.

nibabel/gifti/parse_gifti_fast.py

@@ -103,7 +103,7 @@ def read_data_block(darray, fname, data, mmap):
         # mmap=False or np.memmap failed
         if newarr is None:
             # We can replace this with a call to np.fromfile in numpy>=1.17,
-            # as an "offset" paramter was added in that version.
+            # as an "offset" parameter was added in that version.
             with open(ext_fname, 'rb') as f:
                 f.seek(darray.ext_offset)
                 nbytes = np.prod(darray.dims) * dtype().itemsize

nibabel/tests/test_diff.py

@@ -73,7 +73,7 @@ def test_diff_values_array():
     assert are_values_different(array([0, inf]), array([inf, 0]))
 
     # we will allow for types to be of different endianness but the
-    # same in "instnatiation" type and value
+    # same in "instantiation" type and value
     assert not are_values_different(np.array(1, dtype='<i4'), np.array(1, dtype='>i4'))
     # but do report difference if instantiation type is different:
-    assert are_values_different(np.array(1, dtype='<i4'), np.array(1, dtype='<i2'))
+    assert are_values_different(np.array(1, dtype='<i4'), np.array(1, dtype='<i2'))

nibabel/tests/test_loadsave.py

@@ -36,7 +36,7 @@ def test_read_img_data():
     ]
     fnames_test += [pathlib.Path(p) for p in fnames_test]
     for fname in fnames_test:
-        # os.path.join doesnt work between str / os.PathLike in py3.5
+        # os.path.join doesn't work between str / os.PathLike in py3.5
         fpath = pjoin(data_path, str(fname))
         if isinstance(fname, pathlib.Path):
             fpath = pathlib.Path(fpath)
@@ -56,7 +56,7 @@ def test_read_img_data():
             up_fpath = pjoin(tmpdir, str(fname).upper())
             if isinstance(fname, pathlib.Path):
                 up_fpath = pathlib.Path(up_fpath)
-            # shutil doesnt work with os.PathLike in py3.5
+            # shutil doesn't work with os.PathLike in py3.5
             shutil.copyfile(str(fpath), str(up_fpath))
             img = load(up_fpath)
             assert_array_equal(img.dataobj, data)