diff --git a/CHANGELOG.md b/CHANGELOG.md index 06395a190..6a61e5e0a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,13 +18,14 @@ Special thanks to the following for their contributions to the release: - [PR #1608](https://github.com/nf-core/rnaseq/pull/1608) - Bump version after release 3.21.0 - [PR #1613](https://github.com/nf-core/rnaseq/pull/1613) - Fix broken link and add latest kit version for Takara UMI prep in usage documentation - [PR #1614](https://github.com/nf-core/rnaseq/pull/1614) - Template update for nf-core/tools v3.4.1 -- [PR #1618](https://github.com/nf-core/rnaseq/pull/1618) - Fix CI: Ensure confirm-pass job runs for markdown-only PRs - [PR #1617](https://github.com/nf-core/rnaseq/pull/1617) - Update bbmap/bbsplit module -- [PR #1624](https://github.com/nf-core/rnaseq/pull/1624) - Document RSeQC inner_distance limitation for genomes with large chromosomes (>500 Mb), such as plant genomes -- [PR #1625](https://github.com/nf-core/rnaseq/pull/1625) - Add documentation warning about Qualimap read counting bug ([#1273](https://github.com/nf-core/rnaseq/issues/1273)) -- [PR #1622](https://github.com/nf-core/rnaseq/pull/1622) - Update tximeta/tximport module to fix sample name mangling +- [PR #1618](https://github.com/nf-core/rnaseq/pull/1618) - Fix CI: Ensure confirm-pass job runs for markdown-only PRs +- [PR #1619](https://github.com/nf-core/rnaseq/pull/1619) - Update Credits to reflect current maintainership - [PR #1620](https://github.com/nf-core/rnaseq/pull/1620) - Fix bigwig strand labeling for reverse-stranded libraries ([#1591](https://github.com/nf-core/rnaseq/issues/1591)) - [PR #1621](https://github.com/nf-core/rnaseq/pull/1621) - Optimize qualimap performance with multi-threaded name sorting +- [PR #1622](https://github.com/nf-core/rnaseq/pull/1622) - Update tximeta/tximport module to fix sample name mangling +- [PR #1624](https://github.com/nf-core/rnaseq/pull/1624) - Document RSeQC inner_distance limitation for genomes with large chromosomes (>500 Mb), such as plant genomes +- [PR #1625](https://github.com/nf-core/rnaseq/pull/1625) - Add documentation warning about Qualimap read counting bug ([#1273](https://github.com/nf-core/rnaseq/issues/1273)) - [PR #1628](https://github.com/nf-core/rnaseq/pull/1628) - Template update for nf-core/tools v3.5.1 ## [[3.21.0](https://github.com/nf-core/rnaseq/releases/tag/3.21.0)] - 2025-09-18 diff --git a/README.md b/README.md index eaff8e965..79619a722 100644 --- a/README.md +++ b/README.md @@ -113,7 +113,7 @@ You can find numerous talks on the [nf-core events page](https://nf-co.re/events These scripts were originally written for use at the [National Genomics Infrastructure](https://ngisweden.scilifelab.se), part of [SciLifeLab](http://www.scilifelab.se/) in Stockholm, Sweden, by Phil Ewels ([@ewels](https://github.com/ewels)) and Rickard Hammarén ([@Hammarn](https://github.com/Hammarn)). -The pipeline was re-written in Nextflow DSL2 and is primarily maintained by Harshil Patel ([@drpatelh](https://github.com/drpatelh)) from [Seqera Labs, Spain](https://seqera.io/). +The pipeline was re-written in Nextflow DSL2 by Harshil Patel ([@drpatelh](https://github.com/drpatelh)) from [Seqera Labs, Spain](https://seqera.io/), and is currently maintained by Jonathan Manning ([@pinin4fjords](https://github.com/pinin4fjords)) and the nf-core community. The pipeline workflow diagram was initially designed by Sarah Guinchard ([@G-Sarah](https://github.com/G-Sarah)) and James Fellows Yates ([@jfy133](https://github.com/jfy133)), further modifications where made by Harshil Patel ([@drpatelh](https://github.com/drpatelh)) and Maxime Garcia ([@maxulysse](https://github.com/maxulysse)). diff --git a/nextflow.config b/nextflow.config index 707255aab..2772047c2 100644 --- a/nextflow.config +++ b/nextflow.config @@ -356,7 +356,7 @@ manifest { name: 'Jonathan Manning', affiliation: 'Seqera', github: '@pinin4fjords', - contribution: ['maintainer', 'contributor'], + contribution: ['author', 'maintainer'], orcid: '0000-0002-3483-8456' ], [