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Fix the initial scroll-into-view behaviour of the nav sidebar

Overrides the default static/js/theme.js from sphinx-rtd-theme with our customized copy that fixes the initial scroll-into-view behaviour for the nav sidebar, c.f. <readthedocs/sphinx_rtd_theme#1293>.

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lib/nextstrain/sphinx/theme/static/js
- theme.js

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`‎lib/nextstrain/sphinx/theme/static/js/theme.js‎`

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