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Dev #63

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824d713
new wrappers for new binaries
tCeZ Sep 2, 2022
3be105c
update submodule
tCeZ Sep 2, 2022
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4 changes: 2 additions & 2 deletions build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -20,5 +20,5 @@ tar -xvf cellorganizer-binaries.tgz && \
rm cellorganizer-binaries.tgz

#docker build --no-cache -t icaoberg/cellorganizer-jupyter:latest .
docker build -t murphylab/cellorganizer-jupyter:latest .
docker tag murphylab/cellorganizer-jupyter:latest murphylab/cellorganizer-jupyter:mmbios2021
docker build -t murphylab/cellorganizer-jupyter:dev .
docker tag murphylab/cellorganizer-jupyter:dev murphylab/cellorganizer-jupyter:dev
2 changes: 1 addition & 1 deletion cellorganizer-python
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Submodule cellorganizer-python updated 2 files
+58 −3 cellorganizer/tools.py
+3 −0 requirements.txt
4 changes: 2 additions & 2 deletions push.sh
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
#!/bin/bash

docker push murphylab/cellorganizer-jupyter:latest
docker push murphylab/cellorganizer-jupyter:v2.9.1
docker push murphylab/cellorganizer-jupyter:mmbios2021
docker push murphylab/cellorganizer-jupyter:v2.9.3
docker push murphylab/cellorganizer-jupyter:mmbios2022
14 changes: 7 additions & 7 deletions run.sh
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Original file line number Diff line number Diff line change
@@ -1,21 +1,21 @@
#!/bin/bash

if [ ! -d ~/Desktop/mmbios2021 ]; then
if [ ! -d ~/Desktop/mmbios2022 ]; then
DIRECTORY=$(pwd)
####################################################################################################
# icaoberg - this creates temporary folder on Desktop
mkdir -p ~/Desktop/mmbios2021
chmod a+rwx -R ~/Desktop/mmbios2021
cd ~/Desktop/mmbios2021
mkdir -p ~/Desktop/mmbios2022
chmod a+rwx -R ~/Desktop/mmbios2022
cd ~/Desktop/mmbios2022
####################################################################################################
cd $DIRECTORY
fi

############################################################################################################
docker run --rm -p 8888:8888 \
-v ~/Desktop/mmbios2021:/home/murphylab/cellorganizer/local \
--memory="4g" \
--cpus=2 \
-v ~/Desktop/mmbios2022:/home/murphylab/cellorganizer/local \
--memory="12g" \
--cpus=6 \
-e JUPYTER_LAB_ENABLE=yes \
murphylab/cellorganizer-jupyter
############################################################################################################