Merge pull request #416 from vladistan/fix-ignore-yaml

Fix incorrect YAML encoding, ignore intentionally corrupted files

Author: ialarmedalien

.pre-commit-config.yaml

@@ -9,6 +9,7 @@ repos:
   - id: end-of-file-fixer
     exclude: __snapshots__
   - id: check-yaml
+    exclude: test_utils/input/yaml
   - id: check-toml
   - id: trailing-whitespace
 - repo: https://github.com/astral-sh/ruff-pre-commit

tests/test_utils/input/rules-example.yaml

@@ -195,7 +195,8 @@ classes:
       - postconditions:
           none_of:
             - title: IPI should not be used with GO:0003824 catalytic activity or descendents
-              see_also: [GORULE:0000007]
+              see_also:
+                - GORULE:0000007
               #exact_mappings: [GORULE:0000007]
               all_of:
               - slot_conditions:
@@ -205,7 +206,8 @@ classes:
                     has_member:
                       equals_string: GO:0003824
             - title: No annotations should be made to uninformative high level terms
-              see_also: [GORULE:0000008]
+              see_also:
+               - GORULE:0000008
               any_of:
                 - slot_conditions:
                     term_subsets:
@@ -219,13 +221,17 @@ classes:
                       none_of:
                         - equals_string_in: [IEA, ISS, ISO, IBA]
             - title: ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
-              see_also: [GORULE:0000011]
+              see_also:
+               - GORULE:0000011
               slot_conditions:
                 evidence_type:
                   equals_string: ND
                 term:
                   none_of:
-                    - equals_string_in: [GO:0008150, GO:0003674, GO:0005575]
+                    - equals_string_in:
+                      - GO:0008150
+                      - GO:0003674
+                      - GO:0005575
 
 
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