Merge pull request #327 from linkml/linkml-model-1.8.0rc2

linkml-model-1.8.0rc2

Author: cmungall

linkml_runtime/linkml_model/annotations.py

@@ -1,5 +1,5 @@
 # Auto generated from annotations.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:22
+# Generation date: 2024-06-27T23:15:03
 # Schema: annotations
 #
 # id: https://w3id.org/linkml/annotations

linkml_runtime/linkml_model/datasets.py

@@ -1,5 +1,5 @@
 # Auto generated from datasets.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:27
+# Generation date: 2024-06-27T23:15:13
 # Schema: datasets
 #
 # id: https://w3id.org/linkml/datasets

linkml_runtime/linkml_model/excel/meta.xlsx

@@ -1,5 +1,5 @@
 # Auto generated from extensions.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:29
+# Generation date: 2024-06-27T23:15:16
 # Schema: extensions
 #
 # id: https://w3id.org/linkml/extensions

linkml_runtime/linkml_model/extensions.py

@@ -156,8 +156,10 @@ type AnonymousSlotExpression implements SlotExpression
     range: Element
     rangeExpression: AnonymousClassExpression
     enumRange: EnumExpression
+    bindings: [EnumBinding]
     required: Boolean
     recommended: Boolean
+    multivalued: Boolean
     inlined: Boolean
     inlinedAsList: Boolean
     minimumValue: Anything
@@ -212,7 +214,6 @@ type ArrayExpression implements Extensible, Annotatable, CommonMetadata
     exactNumberDimensions: Integer
     minimumNumberDimensions: Integer
     maximumNumberDimensions: Anything
-    hasExtraDimensions: Boolean
     dimensions: [DimensionExpression]
     extensions: [Extension]
     annotations: [Annotation]
@@ -564,6 +565,49 @@ type Element implements Extensible, Annotatable, CommonMetadata
     keywords: [String]
   }
 
+type EnumBinding implements Extensible, Annotatable, CommonMetadata
+  {
+    range: EnumDefinition
+    obligationLevel: ObligationLevelEnum
+    bindsValueOf: String
+    pvFormula: PvFormulaOptions
+    extensions: [Extension]
+    annotations: [Annotation]
+    description: String
+    altDescriptions: [AltDescription]
+    title: String
+    deprecated: String
+    todos: [String]
+    notes: [String]
+    comments: [String]
+    examples: [Example]
+    inSubset: [SubsetDefinition]
+    fromSchema: Uri
+    importedFrom: String
+    source: Uriorcurie
+    inLanguage: String
+    seeAlso: [Uriorcurie]
+    deprecatedElementHasExactReplacement: Uriorcurie
+    deprecatedElementHasPossibleReplacement: Uriorcurie
+    aliases: [String]
+    structuredAliases: [StructuredAlias]
+    mappings: [Uriorcurie]
+    exactMappings: [Uriorcurie]
+    closeMappings: [Uriorcurie]
+    relatedMappings: [Uriorcurie]
+    narrowMappings: [Uriorcurie]
+    broadMappings: [Uriorcurie]
+    createdBy: Uriorcurie
+    contributors: [Uriorcurie]
+    createdOn: Datetime
+    lastUpdatedOn: Datetime
+    modifiedBy: Uriorcurie
+    status: Uriorcurie
+    rank: Integer
+    categories: [Uriorcurie]
+    keywords: [String]
+  }
+
 type EnumDefinition implements EnumExpression
   {
     name: String!
@@ -817,6 +861,8 @@ type PermissibleValue implements Extensible, Annotatable, CommonMetadata
     description: String
     meaning: Uriorcurie
     unit: UnitOfMeasure
+    instantiates: [Uriorcurie]
+    implements: [Uriorcurie]
     isA: PermissibleValue
     mixins: [PermissibleValue]
     extensions: [Extension]
@@ -936,6 +982,7 @@ type SchemaDefinition
     generationDate: Datetime
     slotNamesUnique: Boolean
     settings: [Setting]
+    bindings: [EnumBinding]
     name: Ncname!
   }
 
@@ -997,7 +1044,6 @@ type SlotDefinition implements SlotExpression
     singularName: String
     domain: ClassDefinition
     slotUri: Uriorcurie
-    multivalued: Boolean
     array: ArrayExpression
     inherited: Boolean
     readonly: String
@@ -1032,14 +1078,17 @@ type SlotDefinition implements SlotExpression
     disjointWith: [SlotDefinition]
     childrenAreMutuallyDisjoint: Boolean
     unionOf: [SlotDefinition]
+    typeMappings: [TypeMapping]
     isA: SlotDefinition
     mixins: [SlotDefinition]
     applyTo: [SlotDefinition]
     range: Element
     rangeExpression: AnonymousClassExpression
     enumRange: EnumExpression
+    bindings: [EnumBinding]
     required: Boolean
     recommended: Boolean
+    multivalued: Boolean
     inlined: Boolean
     inlinedAsList: Boolean
     minimumValue: Anything
@@ -1069,8 +1118,10 @@ interface SlotExpression
     range: Element
     rangeExpression: AnonymousClassExpression
     enumRange: EnumExpression
+    bindings: [EnumBinding]
     required: Boolean
     recommended: Boolean
+    multivalued: Boolean
     inlined: Boolean
     inlinedAsList: Boolean
     minimumValue: Anything
@@ -1100,6 +1151,7 @@ type StructuredAlias implements Expression, Extensible, Annotatable, CommonMetad
     literalForm: String!
     predicate: AliasPredicateEnum
     categories: [Uriorcurie]
+    contexts: [Uri]
     extensions: [Extension]
     annotations: [Annotation]
     description: String
@@ -1265,6 +1317,48 @@ interface TypeExpression
     allOf: [AnonymousTypeExpression]
   }
 
+type TypeMapping implements Extensible, Annotatable, CommonMetadata
+  {
+    framework: String!
+    type: TypeDefinition
+    stringSerialization: String
+    extensions: [Extension]
+    annotations: [Annotation]
+    description: String
+    altDescriptions: [AltDescription]
+    title: String
+    deprecated: String
+    todos: [String]
+    notes: [String]
+    comments: [String]
+    examples: [Example]
+    inSubset: [SubsetDefinition]
+    fromSchema: Uri
+    importedFrom: String
+    source: Uriorcurie
+    inLanguage: String
+    seeAlso: [Uriorcurie]
+    deprecatedElementHasExactReplacement: Uriorcurie
+    deprecatedElementHasPossibleReplacement: Uriorcurie
+    aliases: [String]
+    structuredAliases: [StructuredAlias]
+    mappings: [Uriorcurie]
+    exactMappings: [Uriorcurie]
+    closeMappings: [Uriorcurie]
+    relatedMappings: [Uriorcurie]
+    narrowMappings: [Uriorcurie]
+    broadMappings: [Uriorcurie]
+    createdBy: Uriorcurie
+    contributors: [Uriorcurie]
+    createdOn: Datetime
+    lastUpdatedOn: Datetime
+    modifiedBy: Uriorcurie
+    status: Uriorcurie
+    rank: Integer
+    categories: [Uriorcurie]
+    keywords: [String]
+  }
+
 type UniqueKey implements Extensible, Annotatable, CommonMetadata
   {
     uniqueKeyName: String!

linkml_runtime/linkml_model/graphql/meta.graphql

@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-02-07T17:29:49",
+      "generation_date": "2024-06-27T23:15:38",
       "source": "meta.yaml"
    },
    "@context": {
@@ -44,6 +44,9 @@
       "alias": {
          "@id": "skos:prefLabel"
       },
+      "contexts": {
+         "@type": "@id"
+      },
       "predicate": {
          "@context": {
             "@vocab": "@null",
@@ -86,6 +89,9 @@
       "bidirectional": {
          "@type": "xsd:boolean"
       },
+      "bindings": {
+         "@type": "@id"
+      },
       "boolean_slot": {
          "@type": "@id"
       },
@@ -233,9 +239,6 @@
       "generation_date": {
          "@type": "xsd:dateTime"
       },
-      "has_extra_dimensions": {
-         "@type": "xsd:boolean"
-      },
       "has_member": {
          "@type": "@id"
       },
@@ -357,6 +360,9 @@
       "locally_reflexive": {
          "@type": "xsd:boolean"
       },
+      "type": {
+         "@type": "@id"
+      },
       "mappings": {
          "@type": "@id",
          "@id": "skos:mappingRelation"
@@ -412,6 +418,14 @@
       "notes": {
          "@id": "skos:editorialNote"
       },
+      "obligation_level": {
+         "@context": {
+            "@vocab": "@null",
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         }
+      },
       "open_world": {
          "@type": "xsd:boolean"
       },
@@ -607,6 +621,9 @@
       "tree_root": {
          "@type": "xsd:boolean"
       },
+      "type_mappings": {
+         "@type": "@id"
+      },
       "uri": {
          "@type": "@id"
       },