implement move changes from livecoms

Author: simongravelle

.dependencies/.github

@@ -67,6 +67,8 @@ The other pages use the [Sphinx](https://www.sphinx-doc.org/) generator with the
 
 - [Simon Gravelle](https://github.com/simongravelle) (corr. author),
   Université Grenoble Alpes, CNRS, LIPhy, 38000 Grenoble, France.
+- [Cecilia M. S. Alvares](https://github.com/cecimarques),
+  Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
 - [Jacob R. Gissinger](https://www.stevens.edu/profile/jgissing),
   Stevens Institute of Technology, Hoboken, NJ 07030, USA.
 - [Axel Kohlmeyer](https://sites.google.com/site/akohlmey),

.dependencies/lammpstutorials-inputs

@@ -23,7 +23,7 @@
                             <h1>LAMMPS tutorials</h1> 
                             <h2>
                                 by <a target="_blank" href="https://simongravelle.github.io/"">
-                                Simon Gravelle</a>, Jacob R. Gissinger, and Axel Kohlmeyer                    
+                                Simon Gravelle</a>, Cecilia M. S. Alvares, Jacob R. Gissinger, and Axel Kohlmeyer                    
                             </h2>
                         </center>
                         <br>

README.md

@@ -87,18 +87,19 @@ About LAMMPS--GUI
 
 LAMMPS--GUI is a graphical text editor, enhanced for editing LAMMPS
 input files and linked to the LAMMPS library, allowing it to run LAMMPS
-directly.  The text editor functions similarly to other graphical
+directly.  The text editor is similar to other graphical
 editors, such as Notepad or Gedit, but offers the following enhancements
-specifically for LAMMPS:
+specifically for running LAMMPS:
 
 - Wizard dialogs to set up these tutorials
 - Auto-completion of LAMMPS commands and options
 - Context-sensitive online help
 - Syntax highlighting for LAMMPS input files
 - Syntax-aware line indentation
+- Editor switches working directory to that of input file
 - Visualization using LAMMPS' built-in renderer
 - Start and stop simulations via mouse or keyboard
-- Monitoring of simulation progress
+- Monitoring of simulation progress and parallelization
 - Dynamic capture of LAMMPS output in a text window
 - Automatic plotting of thermodynamic data during runs
 - Capture of ``dump image`` outputs for animations

docs/index.html

@@ -4,7 +4,11 @@ Scope
 *****
 
 This set of tutorials consists of eight tutorials arranged in order of
-increasing difficulty.  The novelties associated with each tutorial are
+increasing difficulty.  Although each tutorial can be
+read independently, information introduced in earlier tuto-
+rials is generally not repeated in detail in later ones. For this
+reason, we recommend that beginners follow the tutorials in
+order.  The novelties associated with each tutorial are
 briefly described below.
 
 In :ref:`lennard-jones-label`, the structure of LAMMPS
@@ -48,7 +52,8 @@ reactions by dynamically adjusting atomic interactions
 method that allows the partial charges of atoms to adjust according to
 their local environment.
 
-In :ref:`gcmc-silica-label`, a Monte Carlo simulation in
+In :ref:`gcmc-silica-label`, the adsorption of a fluid in silica pores is
+modeled. To do so, a Monte Carlo simulation in
 the grand canonical ensemble is implemented to demonstrate how LAMMPS
 can be used to simulate an open system that exchanges particles with a
 reservoir.

docs/sphinx/source/non-tutorials/prerequisites.rst

@@ -96,7 +96,10 @@ slab geometries.
     :class: non-title-info
 
     Each LAMMPS command is accompanied by extensive online |lammpsdocs|
-    that details the different options for that command.
+    that lists and discusses the different options for that command.
+    Most LAMMPS commands also have default settings that are applied if no
+    value is explicitly specified. The defaults for each com-
+    mand are listed at the bottom of its documentation page.
     From the LAMMPS--GUI editor buffer, you can access the documentation by  
     right-clicking on a line containing a command (e.g., ``units lj``)  
     and selecting ``View Documentation for `units'``.  This action