Merge branch 'main' into HEAD

Author: erik-krogh

.git-blame-ignore-revs

@@ -0,0 +1,21 @@
+# .git-blame-ignore-revs
+# Auto-formatted Java
+730eae952139209fe9fdf598541d608f4c0c0c84
+# Auto-formatted C#
+5ad7ed49dd3de03ec6dcfcb6848758a6a987e11c
+# Auto-formatted C/C++
+ef97e539ec1971494d4bba5cafe82e00bc8217ac
+# Auto-formatted Python
+21d5fa836b3a7d020ba45e8b8168b145a9772131
+# Auto-formatted JavaScript
+8d97fe9ed327a9546ff2eaf515cf0f5214deddd9
+# Auto-formatted Ruby
+a5d229903d2f12d45f2c2c38822f1d0e7504ae7f
+# Auto-formatted Go
+08c658e66bf867090033ea096e244a93d46c0aa7
+# Auto-formatted Swift
+711d7057f79fb7d72fc3b35e010bd018f9009169
+# Auto-formatted shared ql packs
+3640b6d3a8ce9edf8e1d3ed106fe8526cf255bc0
+# Auto-formatted taint tracking files
+159d8e978c51959b380838c080d891b66e763b19

.github/workflows/check-qldoc.yml

@@ -26,9 +26,8 @@ jobs:
         shell: bash
         run: |
           EXIT_CODE=0
-          # TODO: remove the swift exception from the regex when we fix generated QLdoc
           # TODO: remove the shared exception from the regex when coverage of qlpacks without dbschemes is supported
-          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!(swift|shared))[a-z]*/ql/lib' || true; } | sort -u)"
+          changed_lib_packs="$(git diff --name-only --diff-filter=ACMRT HEAD^ HEAD | { grep -Po '^(?!(shared))[a-z]*/ql/lib' || true; } | sort -u)"
           for pack_dir in ${changed_lib_packs}; do
             lang="${pack_dir%/ql/lib}"
             codeql generate library-doc-coverage --output="${RUNNER_TEMP}/${lang}-current.txt" --dir="${pack_dir}"

CODEOWNERS

@@ -2,9 +2,9 @@
 /csharp/ @github/codeql-csharp
 /go/ @github/codeql-go
 /java/ @github/codeql-java
-/javascript/ @github/codeql-dynamic
-/python/ @github/codeql-dynamic
-/ruby/ @github/codeql-dynamic
+/javascript/ @github/codeql-javascript
+/python/ @github/codeql-python
+/ruby/ @github/codeql-ruby
 /swift/ @github/codeql-swift
 /misc/codegen/ @github/codeql-swift
 /java/kotlin-extractor/ @github/codeql-kotlin

config/identical-files.json

@@ -1,45 +1,67 @@
 {
   "DataFlow Java/C++/C#/Go/Python/Ruby/Swift": [
+    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlow.qll",
+    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlow.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlow.qll",
+    "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlow.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlow.qll",
+    "go/ql/lib/semmle/go/dataflow/internal/DataFlow.qll",
+    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlow.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlow.qll",
+    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlow.qll"
+  ],
+  "DataFlowImpl Java/C++/C#/Go/Python/Ruby/Swift": [
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
+    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl.qll",
+    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
+    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
+  ],
+  "DataFlow Java/C++/C#/Go/Python/Ruby/Swift Legacy Configuration": [
+    "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl1.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl2.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl3.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl4.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl5.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl6.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForSerializability.qll",
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplForOnActivityResult.qll",
-    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl1.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl2.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl3.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImpl4.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/DataFlowImplLocal.qll",
-    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl1.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
-    "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl.qll",
+    "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl1.qll",
     "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl2.qll",
     "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl3.qll",
     "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/DataFlowImpl4.qll",
-    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl1.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl2.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl3.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl4.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImpl5.qll",
     "csharp/ql/lib/semmle/code/csharp/dataflow/internal/DataFlowImplForContentDataFlow.qll",
-    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl.qll",
+    "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl1.qll",
     "go/ql/lib/semmle/go/dataflow/internal/DataFlowImpl2.qll",
     "go/ql/lib/semmle/go/dataflow/internal/DataFlowImplForStringsNewReplacer.qll",
-    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl.qll",
+    "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl1.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl2.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl3.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImpl4.qll",
     "python/ql/lib/semmle/python/dataflow/new/internal/DataFlowImplForRegExp.qll",
-    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl1.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImpl2.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForHttpClientLibraries.qll",
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplForPathname.qll",
-    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl.qll"
+    "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImpl1.qll"
   ],
   "DataFlow Java/C++/C#/Go/Python/Ruby/Swift Common": [
     "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll",
@@ -52,7 +74,18 @@
     "ruby/ql/lib/codeql/ruby/dataflow/internal/DataFlowImplCommon.qll",
     "swift/ql/lib/codeql/swift/dataflow/internal/DataFlowImplCommon.qll"
   ],
-  "TaintTracking::Configuration Java/C++/C#/Go/Python/Ruby/Swift": [
+  "TaintTracking Java/C++/C#/Go/Python/Ruby/Swift": [
+    "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "cpp/ql/lib/experimental/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "csharp/ql/lib/semmle/code/csharp/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "go/ql/lib/semmle/go/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "python/ql/lib/semmle/python/dataflow/new/internal/tainttracking1/TaintTracking.qll",
+    "ruby/ql/lib/codeql/ruby/dataflow/internal/tainttracking1/TaintTracking.qll",
+    "swift/ql/lib/codeql/swift/dataflow/internal/tainttracking1/TaintTracking.qll"
+  ],
+  "TaintTracking Legacy Configuration Java/C++/C#/Go/Python/Ruby/Swift": [
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/dataflow/internal/tainttracking2/TaintTrackingImpl.qll",
     "cpp/ql/lib/semmle/code/cpp/ir/dataflow/internal/tainttracking1/TaintTrackingImpl.qll",

cpp/autobuilder/Semmle.Autobuild.Cpp.Tests/BuildScripts.cs

@@ -1,5 +1,6 @@
 using Xunit;
 using Semmle.Autobuild.Shared;
+using Semmle.Util;
 using System.Collections.Generic;
 using System;
 using System.Linq;
@@ -75,6 +76,15 @@ int IBuildActions.RunProcess(string cmd, string args, string? workingDirectory,
             throw new ArgumentException("Missing RunProcess " + pattern);
         }
 
+        int IBuildActions.RunProcess(string cmd, string args, string? workingDirectory, IDictionary<string, string>? env, BuildOutputHandler onOutput, BuildOutputHandler onError)
+        {
+            var ret = (this as IBuildActions).RunProcess(cmd, args, workingDirectory, env, out var stdout);
+
+            stdout.ForEach(line => onOutput(line));
+
+            return ret;
+        }
+
         public IList<string> DirectoryDeleteIn = new List<string>();
 
         void IBuildActions.DirectoryDelete(string dir, bool recursive)
@@ -184,6 +194,15 @@ public void DownloadFile(string address, string fileName)
             if (!DownloadFiles.Contains((address, fileName)))
                 throw new ArgumentException($"Missing DownloadFile, {address}, {fileName}");
         }
+
+        public IDiagnosticsWriter CreateDiagnosticsWriter(string filename) => new TestDiagnosticWriter();
+    }
+
+    internal class TestDiagnosticWriter : IDiagnosticsWriter
+    {
+        public IList<DiagnosticMessage> Diagnostics { get; } = new List<DiagnosticMessage>();
+
+        public void AddEntry(DiagnosticMessage message) => this.Diagnostics.Add(message);
     }
 
     /// <summary>
@@ -243,6 +262,7 @@ CppAutobuilder CreateAutoBuilder(bool isWindows,
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_TRAP_DIR"] = "";
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_SOURCE_ARCHIVE_DIR"] = "";
             Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_ROOT"] = $@"C:\codeql\{codeqlUpperLanguage.ToLowerInvariant()}";
+            Actions.GetEnvironmentVariable[$"CODEQL_EXTRACTOR_{codeqlUpperLanguage}_DIAGNOSTIC_DIR"] = "";
             Actions.GetEnvironmentVariable["CODEQL_JAVA_HOME"] = @"C:\codeql\tools\java";
             Actions.GetEnvironmentVariable["CODEQL_PLATFORM"] = "win64";
             Actions.GetEnvironmentVariable["SEMMLE_DIST"] = @"C:\odasa";

cpp/autobuilder/Semmle.Autobuild.Cpp/CppAutobuilder.cs

@@ -1,4 +1,5 @@
 using Semmle.Autobuild.Shared;
+using Semmle.Util;
 
 namespace Semmle.Autobuild.Cpp
 {
@@ -21,7 +22,7 @@ public CppAutobuildOptions(IBuildActions actions) : base(actions)
 
     public class CppAutobuilder : Autobuilder<CppAutobuildOptions>
     {
-        public CppAutobuilder(IBuildActions actions, CppAutobuildOptions options) : base(actions, options) { }
+        public CppAutobuilder(IBuildActions actions, CppAutobuildOptions options) : base(actions, options, new DiagnosticClassifier()) { }
 
         public override BuildScript GetBuildScript()
         {

cpp/ql/lib/CHANGELOG.md

@@ -1,3 +1,7 @@
+## 0.5.4
+
+No user-facing changes.
+
 ## 0.5.3
 
 No user-facing changes.

cpp/ql/lib/change-notes/2023-03-02-dataflow-conf-module.md

@@ -0,0 +1,9 @@
+---
+category: majorAnalysis
+---
+* The main data flow and taint tracking APIs have been changed. The old APIs
+  remain in place for now and translate to the new through a
+  backwards-compatible wrapper. If multiple configurations are in scope
+  simultaneously, then this may affect results slightly. The new API is quite
+  similar to the old, but makes use of a configuration module instead of a
+  configuration class.

cpp/ql/lib/change-notes/2023-03-03-delete-deps.md

@@ -0,0 +1,12 @@
+---
+category: minorAnalysis
+---
+* Deleted the deprecated `hasGeneratedCopyConstructor` and `hasGeneratedCopyAssignmentOperator` predicates from the `Folder` class.
+* Deleted the deprecated `getPath` and `getFolder` predicates from the `XmlFile` class.
+* Deleted the deprecated `getMustlockFunction`, `getTrylockFunction`, `getLockFunction`, and `getUnlockFunction` predicates from the `MutexType` class.
+* Deleted the deprecated `getPosInBasicBlock` predicate from the `SubBasicBlock` class.
+* Deleted the deprecated `getExpr` predicate from the `PointerDereferenceExpr` class.
+* Deleted the deprecated `getUseInstruction` and `getDefinitionInstruction` predicates from the `Operand` class.
+* Deleted the deprecated `isInParameter`, `isInParameterPointer`, and `isInQualifier` predicates from the `FunctionInput` class.
+* Deleted the deprecated `isOutParameterPointer`, `isOutQualifier`, `isOutReturnValue`, and `isOutReturnPointer` predicate from the `FunctionOutput` class.
+* Deleted the deprecated 3-argument `isGuardPhi` predicate from the `RangeSsaDefinition` class.

cpp/ql/lib/change-notes/2023-03-13-mergepathgraph.md

@@ -0,0 +1,4 @@
+---
+category: feature
+---
+* Added support for merging two `PathGraph`s via disjoint union to allow results from multiple data flow computations in a single `path-problem` query.