create Zarr Dataset

Author: Thechopsee

.gitignore

@@ -45,3 +45,8 @@ cookies.txt
 
 # Vim #
 .*.sw*
+at3_1m4_01.tif
+at3_1m4_02.tif
+at3_1m4_03.tif
+at3_1m4_05.tif
+at3_1m4_06.tif

src/main/java/cz/it4i/fiji/legacy/CreateNewDataset.java

@@ -27,7 +27,7 @@
 import cz.it4i.fiji.rest.util.DatasetInfo;
 
 @Plugin(type = Command.class, headless = true, menuPath = "Plugins>HPC DataStore>Create>Create new dataset")
-public class CreateNewDataset implements Command {
+public abstract class CreateNewDataset implements Command {
 	@Parameter(label = "URL of a DatasetsRegisterService:", persistKey = "datasetserverurl")
 	public String url = "someHostname:9080";
 
@@ -97,6 +97,11 @@ public class CreateNewDataset implements Command {
 	@Parameter(type = ItemIO.OUTPUT, label="Label of the created dataset:")
 	public String newDatasetLabel;
 
+	protected  String getDatasetType()
+	{
+		return "N5";
+	}
+
 	@Override
 	public void run() {
 		//logging facility
@@ -162,7 +167,7 @@ public void run() {
 			myLogger.info("CREATED JSON:\n"+json);
 
 			final Future<CommandModule> subcall = cs.run(CreateNewDatasetFromJSON.class, true,
-					"url",url, "json",json, "showRunCmd",showRunCmd);
+					"url",url, "json",json, "showRunCmd",showRunCmd,"datasetType",getDatasetType());
 			newDatasetUUID = (String)subcall.get().getOutput("newDatasetUUID");
 			newDatasetLabel = di.getLabel();
 		} catch (ExecutionException e) {
@@ -173,4 +178,6 @@ public void run() {
 			myLogger.error("Error converting dataset description into JSON:"+e.getMessage());
 		}
 	}
+
+
 }

src/main/java/cz/it4i/fiji/legacy/CreateNewDatasetFromJSON.java

@@ -37,14 +37,21 @@ public class CreateNewDatasetFromJSON implements Command {
 	public String newDatasetUUID;
 	@Parameter(type = ItemIO.OUTPUT, label="Label of the created dataset:")
 	public String newDatasetLabel;
+	@Parameter
+	public String datasetType;
 
 	@Override
 	public void run() {
 		//logging facility
 		myLogger = mainLogger.subLogger("HPC CreateDataset", LogLevel.INFO);
 
 		try {
-			final HttpURLConnection connection = (HttpURLConnection)new URL("http://"+this.url+"/datasets").openConnection();
+			String add="/datasets";
+			if(datasetType.equals("Zarr"))
+			{
+				add+="zarr";
+			}
+			final HttpURLConnection connection = (HttpURLConnection)new URL("http://"+this.url+add).openConnection();
 			connection.setRequestMethod("POST");
 			connection.setRequestProperty("Content-Type","application/json");
 			connection.setDoOutput(true);

src/main/java/cz/it4i/fiji/legacy/CreateNewDatasetZarr.java

@@ -0,0 +1,16 @@
+package cz.it4i.fiji.legacy;
+
+import org.scijava.command.Command;
+import org.scijava.plugin.Plugin;
+
+//TODO add more components
+@Plugin(type = Command.class, headless = true, menuPath = "Plugins>HPC DataStore>Create ZARR>Create new dataset")
+public class CreateNewDatasetZarr extends CreateNewDataset {
+
+    @Override
+    protected String getDatasetType()
+    {
+        return "Zarr";
+    }
+
+}