fixup HG: adapted .ijm examples (thank

Author: xulman

src/main/ijm/TIFFs-Downscale-And-To-DataStore.ijm

@@ -28,7 +28,7 @@ function padding(number, width) {
 }
 
 function justSaveAsLevel(resLevelX,resLevelY,resLevelZ) {
-	run("Write full image", "url="+host_port+" datasetid="+dataset+" timepoint="+t+" channel="+uploadIntoThisChannel+" angle="+uploadIntoThisAngle+" resolutionlevelsasstr=[["+resLevelX+", "+resLevelY+", "+resLevelZ+"]] versionasstr="+version+" timeout="+(timeout*1000)+" verboselog="+verboseUpload);
+	run("Write full image", "url="+host_port+" datasetid="+dataset+" versionasstr="+version+" timepoint="+t+" channel="+uploadIntoThisChannel+" angle="+uploadIntoThisAngle+" resolutionlevelsasstr=[["+resLevelX+", "+resLevelY+", "+resLevelZ+"]] timeout="+(timeout*1000)+" verboselog="+verboseUpload+" uploadrespyramids=false");
 }
 
 function scaleAndSave(refMainImg, resLevelX,resLevelY,resLevelZ) {

src/main/ijm/TIFFs-To-DataStore.ijm

@@ -27,39 +27,15 @@ function padding(number, width) {
 	}
 }
 
-function justSaveAsLevel(resLevelX,resLevelY,resLevelZ) {
-	run("Write full image", "url="+host_port+" datasetid="+dataset+" versionasstr="+version+" timepoint="+t+" channel="+uploadIntoThisChannel+" angle="+uploadIntoThisAngle+" resolutionlevelsasstr=[["+resLevelX+", "+resLevelY+", "+resLevelZ+"]] timeout="+(timeout*1000)+" verboselog="+verboseUpload+" uploadrespyramids=true");
-}
-
-function scaleAndSave(refMainImg, resLevelX,resLevelY,resLevelZ) {
-	xFac = 1/resLevelX;
-	yFac = 1/resLevelY;
-	zFac = 1/resLevelZ;
-	selectImage(refMainImg);
-	run("Scale...", "x="+xFac+" y="+yFac+" z="+zFac+" interpolation=None process create");
-	justSaveAsLevel(resLevelX,resLevelY,resLevelZ);
-	close();
-	//NB: close() is counterpart to "create" in the run() above
-}
-
 print("Uploading started....");
 for (t = uploadTimePoint_FROM; t <= uploadTimePoint_TILL; t++) {
 	filename = inputDir+"/"+fileNameBeforeTPNumber+padding(t,zeroPaddingWidth)+fileNameAfterTPNumber;
 	print("Doing TP "+t+", that is a file: "+filename);
 
 	open(filename);
-	mainImgID = getImageID();
-
-	print("Saving resolution level 1");
-	justSaveAsLevel(1,1,1);
-
-	print("Saving resolution level 2");
-	scaleAndSave(mainImgID, 2,2,1);
 
-	print("Saving resolution level 3");
-	scaleAndSave(mainImgID, 4,4,1);
+	run("Write full image", "url="+host_port+" datasetid="+dataset+" versionasstr="+version+" timepoint="+t+" channel="+uploadIntoThisChannel+" angle="+uploadIntoThisAngle+" resolutionlevelsasstr=[[1, 1, 1]] timeout="+(timeout*1000)+" verboselog="+verboseUpload+" uploadrespyramids=true");
 
-	selectImage(mainImgID);
 	close();
 }
 print("Uploading finished....");