https://github.com/diffplug/goomph/blob/main/src/main/java/com/diffplug/gradle/eclipse/apt/EclipseJdtApt.java#L117
The EclipseJdtApt#setGenTestSrcDir(Object) method targets the wrong extension property - it should be genTestSrcDir rather than genSrcDir.
I'll provide a PR shortly.