diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index a2f110fd..0206c115 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -49,10 +49,10 @@ jobs: - name: run pre-commit if: ${{ matrix.python-version == env.LATEST_PY_VERSION }} run: | - uv run pre-commit run --all-files + uv run pre-commit run --all-files --verbose --show-diff-on-failure - name: Run tests - run: uv run pytest + run: uv run pytest -n auto cdk-checks: needs: [tests] diff --git a/.github/workflows/deploy-dev.yml b/.github/workflows/deploy-dev.yml index a7d88e8e..8a980608 100644 --- a/.github/workflows/deploy-dev.yml +++ b/.github/workflows/deploy-dev.yml @@ -31,6 +31,8 @@ jobs: TITILER_MULTIDIM_PYTHONWARNINGS: ignore TITILER_MULTIDIM_DEBUG: true TITILER_MULTIDIM_READER_ROLE_ARN: ${{ vars.TITILER_MULTIDIM_READER_ROLE_ARN }} + TITILER_MULTIDIM_AUTHORIZED_CHUNK_ACCESS: '{"s3://nasa-waterinsight/NLDAS3/forcing/daily/": {"anonymous": true}, "s3://podaac-ops-cumulus-protected/MUR-JPL-L4-GLOB-v4.1/": {"from_env": true}, "s3://nasa-waterinsight/RASI/": {"anonymous": true}}' + steps: - name: Determine branch to deploy diff --git a/.gitignore b/.gitignore index 7bb7a5dd..2afc67a8 100644 --- a/.gitignore +++ b/.gitignore @@ -105,5 +105,7 @@ cdk.out/ node_modules cdk.context.json *.nc +.DS_Store .test-deploy-env +.vscode/settings.json diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 10a63804..9477d10b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,13 +9,19 @@ repos: hooks: - id: ruff args: ["--fix"] + exclude: ^notebooks/ - id: ruff-format + exclude: ^notebooks/ - repo: https://github.com/pre-commit/mirrors-mypy - rev: v0.991 + rev: v1.13.0 hooks: - id: mypy - language_version: python + language_version: python3.12 exclude: tests/.* additional_dependencies: - types-attrs + - types-redis + - types-requests + - boto3-stubs + - types-aiobotocore diff --git a/README.md b/README.md index 72717068..bc2d37c4 100644 --- a/README.md +++ b/README.md @@ -14,6 +14,8 @@ Example of application built with `titiler.xarray` [package](https://development # It's recommended to install dependencies in a virtual environment uv sync --dev export TEST_ENVIRONMENT=true # set this when running locally to mock redis +#optional: Disable caching +#export TITILER_MULTIDIM_ENABLE_CACHE=false uv run uvicorn titiler.multidim.main:app --reload ``` @@ -94,3 +96,4 @@ The following steps detail how to to setup and deploy the CDK stack from your lo In AWS Lambda environment we need to have specific version of botocore, S3FS, FSPEC and other libraries. To make sure the application will both work locally and in AWS Lambda environment you can install the dependencies using `python -m pip install -r infrastructure/aws/requirement-lambda.txt` + diff --git a/infrastructure/aws/cdk/config.py b/infrastructure/aws/cdk/config.py index fe5eff0c..a311ab1e 100644 --- a/infrastructure/aws/cdk/config.py +++ b/infrastructure/aws/cdk/config.py @@ -96,6 +96,20 @@ class AppSettings(BaseSettings): description="Optional root path for all api endpoints", ) + # Authorization config for icechunk virtual chunks + # This will be passed through to the Lambda as an environment variable + authorized_chunk_access: Optional[str] = Field( + None, + description="JSON string for authorizing virtual chunk access in icechunk datasets", + ) + + def model_post_init(self, __context): + """Add authorized_chunk_access to additional_env if set.""" + if self.authorized_chunk_access: + self.additional_env["TITILER_MULTIDIM_AUTHORIZED_CHUNK_ACCESS"] = ( + self.authorized_chunk_access + ) + class Config: """model config""" diff --git a/infrastructure/aws/lambda/Dockerfile b/infrastructure/aws/lambda/Dockerfile index 8edb84ec..380f64c1 100644 --- a/infrastructure/aws/lambda/Dockerfile +++ b/infrastructure/aws/lambda/Dockerfile @@ -15,7 +15,7 @@ EOF FROM public.ecr.aws/lambda/python:${PYTHON_VERSION} AS builder COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/ -RUN dnf install -y gcc-c++ && dnf clean all +RUN dnf install -y gcc-c++ git && dnf clean all WORKDIR /build diff --git a/pyproject.toml b/pyproject.toml index cc0ab158..61f370b2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,8 +25,8 @@ classifiers = [ ] dynamic = ["version"] dependencies = [ - "titiler.core>=0.23.0,<0.24", - "titiler.xarray>=0.23.0,<0.24", + "titiler-core>=0.25.0,<0.26", + "titiler-xarray>=0.25.0,<0.26", "aiohttp", "aiobotocore>=2.24.0", "boto3>=1.39.0", @@ -41,8 +41,9 @@ dependencies = [ "requests", "rioxarray", "s3fs", - "xarray", - "zarr>=2,<3", + "xarray>=2025.10.1", + "zarr>3.1.0", + "icechunk>=1.1.9", ] [project.optional-dependencies] @@ -56,6 +57,7 @@ lambda = [ [dependency-groups] dev = [ + "dask>=2025.9.1", "fakeredis>=2.23.5", "httpx", "ipykernel>=6.30.1", @@ -65,8 +67,11 @@ dev = [ "pytest-asyncio>=0.24.0", "pytest-cov>=5.0.0", "pytest>=8.3.2", + "pytest-xdist", "uvicorn>=0.34.0", "yappi>=1.6.0", + "virtualizarr", + "obstore", ] deployment = [ "aws-cdk-lib~=2.177.0", @@ -74,6 +79,11 @@ deployment = [ "pydantic-settings~=2.0", "python-dotenv>=1.0.1", ] +notebooks = [ + "folium", + "httpx", + "matplotlib", +] [project.urls] Homepage = "https://github.com/developmentseed/titiler-multidim" @@ -97,6 +107,8 @@ known_first_party = ["titiler"] default_section = "THIRDPARTY" [tool.ruff] + +[tool.ruff.lint] select = [ "D1", # pydocstyle errors "E", # pycodestyle errors @@ -111,7 +123,7 @@ ignore = [ "B905", # ignore zip() without an explicit strict= parameter, only support with python >3.10 ] -[tool.ruff.per-file-ignores] +[tool.ruff.lint.per-file-ignores] "tests/test_app.py" = ["D1"] "tests/fixtures/generate_test_zarr.py" = ["D1"] "tests/fixtures/generate_test_reference.py" = ["D1"] @@ -126,8 +138,6 @@ explicit_package_bases = true requires = ["pdm-backend"] build-backend = "pdm.backend" - - [tool.pdm.version] source = "file" path = "src/titiler/multidim/__init__.py" @@ -142,3 +152,4 @@ excludes = ["tests/", "**/.mypy_cache", "**/.DS_Store"] [tool.pytest.ini_options] addopts = "--cov=titiler.multidim --cov-report term-missing -s -vv" +pythonpath = ["src", "tests"] diff --git a/src/titiler/multidim/main.py b/src/titiler/multidim/main.py index ce6509b1..99db5a10 100644 --- a/src/titiler/multidim/main.py +++ b/src/titiler/multidim/main.py @@ -90,7 +90,7 @@ app.add_middleware( ServerTimingMiddleware, calls_to_track={ - "1-xarray-open_dataset": (reader.xarray_open_dataset,), + "1-xarray-open_dataset": (reader.guess_opener,), "2-rioxarray-reproject": (rioxarray.raster_array.RasterArray.reproject,), }, ) diff --git a/src/titiler/multidim/reader.py b/src/titiler/multidim/reader.py index 73477235..047760fa 100644 --- a/src/titiler/multidim/reader.py +++ b/src/titiler/multidim/reader.py @@ -1,24 +1,198 @@ """XarrayReader""" import pickle -from typing import Any, List, Optional +import os +from typing import Any, List, Optional, Dict +from urllib.parse import urlparse + import attr +import xarray as xr from titiler.multidim.redis_pool import get_redis from titiler.multidim.settings import ApiSettings from titiler.xarray.io import Reader, get_variable, xarray_open_dataset +try: + import icechunk +except ImportError: # pragma: nocover + icechunk = None # type: ignore + +try: + import fsspec +except ImportError: # pragma: nocover + fsspec = None # type: ignore + +try: + import obstore +except ImportError: # pragma: nocover + obstore = None # type: ignore + +try: + import h5netcdf +except ImportError: # pragma: nocover + h5netcdf = None # type: ignore + +try: + import zarr +except ImportError: # pragma: nocover + zarr = None # type: ignore + api_settings = ApiSettings() cache_client = get_redis() +def opener_icechunk( + src_path: str, + group: Optional[Any] = None, + decode_times: bool = True, + authorize_virtual_chunk_access: Optional[Dict[str, Dict[str, Any]]] = None, +) -> xr.Dataset: + """Open an IceChunk dataset using xarray.""" + assert icechunk is not None, "'icechunk' must be installed to read icechunk dataset" + + # TODO: This will likely be repeated across openers. Can we somehow handle this in the Reader Class? + parsed = urlparse(src_path) + protocol = parsed.scheme or "file" + + authorize_virtual_chunk_access = authorize_virtual_chunk_access or {} + + if protocol == "file": + storage = icechunk.local_filesystem_storage(src_path) + elif protocol == "s3": + storage = icechunk.s3_storage( + bucket=parsed.netloc, + prefix=parsed.path.lstrip( + "/" + ), # remove leading slash, this is an annoying mismatch between icechunk and urlparse + from_env=True, # we always assume that we can get credentials from env vars or IAM role for the store itself? + ) + else: + raise NotImplementedError( + f"icechunk storage for protocol {protocol} is not implemented" + ) + # TODO: I think it would be more elegant to get the virtual chunk containers and + # compare against authorized containers from settings but that might be slowing things down. Leaving this for later. + + vchunk_creds = ( + icechunk.containers_credentials( + { + prefix: icechunk.s3_credentials(**auth_kwargs) + for prefix, auth_kwargs in authorize_virtual_chunk_access.items() + } + ) + if authorize_virtual_chunk_access + else None + ) + + repo = icechunk.Repository.open( + storage=storage, authorize_virtual_chunk_access=vchunk_creds + ) + session = repo.readonly_session("main") + store = session.store + return xr.open_dataset( + store, + group=group, + decode_times=decode_times, + engine="zarr", + consolidated=False, + zarr_format=3, + ) + + +# TODO Is there a better way to check if a url points to a file or a prefix? +def _is_dir(store, path: str = "") -> bool: + """Return True if path is a prefix containing any objects (directory-like).""" + # sanitize path and slashes + path = path.rstrip("/") + "/" + stream = store.list(prefix=path, chunk_size=1) + try: + batch = next(stream) + return len(batch) > 0 + except StopIteration: + return False + + +def identify_storage_backend(src_path: str) -> str: + """Identify the storage backend for a given path.""" + parsed = urlparse(src_path) + protocol = parsed.scheme or "file" + + if protocol == "file": + store = obstore.store.LocalStore(src_path) + elif protocol == "s3": + store = obstore.store.S3Store( + bucket=parsed.netloc, + prefix=parsed.path.lstrip("/"), + ) + else: + raise NotImplementedError( + f"Storage backend identification for protocol {protocol} is not implemented" + ) + + is_dir = _is_dir(store) + if not is_dir: + # assume this is a file, and detect the format based on the file extension + _, ext = os.path.splitext(parsed.path) + if ext in [".nc", ".nc4"]: + format = "h5netcdf" + else: + raise NotImplementedError( + f"File format identification for extension {ext} is not implemented" + ) + else: + has_manifests = _is_dir(store, "manifests") + if has_manifests: + format = "icechunk" + else: + format = "zarr" + return format + + +def guess_opener( + src_path: str, + group: Optional[Any] = None, + decode_times: bool = True, + authorize_virtual_chunk_access: Optional[Dict[str, Dict[str, Any]]] = None, + **kwargs: Any, +) -> xr.Dataset: + """Guess the storage backend and return an xarray Dataset. + + Args: + src_path: Path to the dataset + group: Optional group/subgroup to open + decode_times: Whether to decode time coordinates + authorize_virtual_chunk_access: Authorization config for icechunk virtual chunks + **kwargs: Additional arguments to pass to the opener + + Returns: + xarray.Dataset + """ + + # Identify the storage backend + storage_format = identify_storage_backend(src_path) + + if storage_format == "icechunk": + return opener_icechunk( + src_path, + group=group, + decode_times=decode_times, + authorize_virtual_chunk_access=authorize_virtual_chunk_access, + ) + else: + # For zarr, h5netcdf, or other formats, use the standard xarray opener + return xarray_open_dataset( + src_path, group=group, decode_times=decode_times, **kwargs + ) + + @attr.s class XarrayReader(Reader): """Custom XarrayReader with redis cache""" def __attrs_post_init__(self): """Set bounds and CRS.""" + self.opener = guess_opener ds = None # Generate cache key and attempt to fetch the dataset from cache cache_key = f"{self.src_path}_group:{self.group}_time:{self.decode_times}" @@ -29,10 +203,17 @@ def __attrs_post_init__(self): print(f"Found dataset in Cache {cache_key}") ds = pickle.loads(data_bytes) + # If opener_options doesn't have authorize_virtual_chunk_access, use settings + if "authorize_virtual_chunk_access" not in self.opener_options: + self.opener_options["authorize_virtual_chunk_access"] = ( + api_settings.authorized_chunk_access + ) + self.ds = ds or self.opener( self.src_path, group=self.group, decode_times=self.decode_times, + **self.opener_options, ) if not ds and api_settings.enable_cache: @@ -55,11 +236,21 @@ def list_variables( src_path: str, group: Optional[Any] = None, decode_times: bool = True, + opener_options: Optional[Dict[str, Any]] = None, ) -> List[str]: """List available variable in a dataset.""" - with xarray_open_dataset( + # todo: why is this not a method of the reader class? Seems like a smell that I have to define the opener here again.... + opener_options = opener_options or {} + # If opener_options doesn't have authorize_virtual_chunk_access, use settings + if "authorize_virtual_chunk_access" not in opener_options: + opener_options["authorize_virtual_chunk_access"] = ( + api_settings.authorized_chunk_access + ) + + with guess_opener( src_path, group=group, decode_times=decode_times, + **opener_options, ) as ds: return list(ds.data_vars) # type: ignore diff --git a/src/titiler/multidim/settings.py b/src/titiler/multidim/settings.py index 57ca2683..cf03b9d7 100644 --- a/src/titiler/multidim/settings.py +++ b/src/titiler/multidim/settings.py @@ -1,5 +1,8 @@ """Titiler-xarray API settings.""" +import json +from typing import Any, Dict + from pydantic import field_validator from pydantic_settings import BaseSettings, SettingsConfigDict @@ -18,6 +21,10 @@ class ApiSettings(BaseSettings): cache_host: str = "127.0.0.1" enable_cache: bool = True + # Configuration for authorizing virtual chunk access in icechunk datasets + # Format: {"s3://bucket/prefix/": {"anonymous": true}, "s3://other/": {"from_env": true}} + authorized_chunk_access: Dict[str, Dict[str, Any]] = {} + @field_validator("cors_origins") def parse_cors_origin(cls, v): """Parse CORS origins.""" @@ -27,3 +34,13 @@ def parse_cors_origin(cls, v): def parse_cors_allow_methods(cls, v): """Parse CORS allowed methods.""" return [method.strip().upper() for method in v.split(",")] + + @field_validator("authorized_chunk_access", mode="before") + def parse_authorized_chunk_access(cls, v): + """Parse authorized_chunk_access from JSON string or dict.""" + if isinstance(v, str): + try: + return json.loads(v) + except json.JSONDecodeError as e: + raise ValueError(f"Invalid JSON in authorized_chunk_access: {e}") from e + return v or {} diff --git a/tests/conftest.py b/tests/conftest.py index 09a793f2..f6362d20 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,14 +1,43 @@ -"""titiler.multidim tests configuration.""" +"""Auto-parametrized fixture that runs both cache configurations.""" +import json +import sys import pytest from fastapi.testclient import TestClient -@pytest.fixture -def app(monkeypatch): - """App fixture.""" +# This fixture will automatically parametrize ALL tests that use it +@pytest.fixture( + params=[ + pytest.param({"cache": True}, id="with_cache"), + pytest.param({"cache": False}, id="without_cache"), + ] +) +def app(request, monkeypatch): + """Auto-parametrized app fixture that runs tests with both cache configurations.""" + config = request.param + enable_cache = config.get("cache", False) + + # Set environment variables using monkeypatch (auto-cleanup) monkeypatch.setenv("TITILER_MULTIDIM_DEBUG", "TRUE") monkeypatch.setenv("TEST_ENVIRONMENT", "1") + monkeypatch.setenv( + "TITILER_MULTIDIM_ENABLE_CACHE", "TRUE" if enable_cache else "FALSE" + ) + # virtual container auth for icechunk tests + monkeypatch.setenv( + "TITILER_MULTIDIM_AUTHORIZED_CHUNK_ACCESS", + json.dumps( + {"s3://nasa-waterinsight/NLDAS3/forcing/daily/": {"anonymous": True}} + ), + ) + + # Clear module cache to ensure fresh import + modules_to_clear = [ + key for key in sys.modules.keys() if key.startswith("titiler.multidim") + ] + for module in modules_to_clear: + del sys.modules[module] from titiler.multidim.main import app diff --git a/tests/fixtures/generate_test_icechunk.py b/tests/fixtures/generate_test_icechunk.py new file mode 100644 index 00000000..9b09d873 --- /dev/null +++ b/tests/fixtures/generate_test_icechunk.py @@ -0,0 +1,60 @@ +"""Create icechunk fixtures (native and later virtual).""" +# TODO: these files could also be generated together with the zarr files using the same data + +import numpy as np +import xarray as xr +import icechunk as ic + +# Define dimensions and chunk sizes +res = 5 +time_dim = 10 +lat_dim = 36 +lon_dim = 72 +chunk_size = {"time": 10, "lat": 10, "lon": 10} + +# Create coordinates +time = np.arange(time_dim) +lat = np.linspace(-90.0 + res / 2, 90.0 - res / 2, lat_dim) +lon = np.linspace(-180.0 + res / 2, 180.0 - res / 2, lon_dim) + +dtype = np.float64 +# Initialize variables with random data +CDD0 = xr.DataArray( + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), + dims=("time", "lat", "lon"), + name="CDD0", +) +DISPH = xr.DataArray( + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), + dims=("time", "lat", "lon"), + name="DISPH", +) +FROST_DAYS = xr.DataArray( + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), + dims=("time", "lat", "lon"), + name="FROST_DAYS", +) +GWETPROF = xr.DataArray( + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), + dims=("time", "lat", "lon"), + name="GWETPROF", +) + +# Create dataset +ds = xr.Dataset( + { + "CDD0": CDD0.chunk(chunk_size), + "DISPH": DISPH.chunk(chunk_size), + "FROST_DAYS": FROST_DAYS.chunk(chunk_size), + "GWETPROF": GWETPROF.chunk(chunk_size), + }, + coords={"time": time, "lat": lat, "lon": lon}, +) +storage = ic.local_filesystem_storage("tests/fixtures/icechunk_native") +config = ic.RepositoryConfig.default() +repo = ic.Repository.create(storage=storage, config=config) +session = repo.writable_session("main") +store = session.store + +ds.to_zarr(store, consolidated=False) +session.commit("Add initial data") diff --git a/tests/fixtures/generate_test_icechunk_virtual.py b/tests/fixtures/generate_test_icechunk_virtual.py new file mode 100644 index 00000000..8ac91192 --- /dev/null +++ b/tests/fixtures/generate_test_icechunk_virtual.py @@ -0,0 +1,61 @@ +"""Here we test generating icechunk virtual files""" + +from virtualizarr import open_virtual_mfdataset +from virtualizarr.parsers import HDFParser +from virtualizarr.registry import ObjectStoreRegistry + +import obstore +import icechunk + +# NOTE: For now Ill build stores that are stored locally, but point to data on s3. +# Eventually this should probably be built out with a bunch of different options? Not sure if local storage referencing local files would make sense? + +# Store that we cannot access from the tests (to ensure proper error handling) - MUR would fit the bill + +# Store that points to a public s3 bucket (Using NLDAS as examples - see https://github.com/virtual-zarr/nldas-icechunk/tree/master for details) + +urls = [ + "s3://nasa-waterinsight/NLDAS3/forcing/daily/200101/NLDAS_FOR0010_D.A20010101.030.beta.nc", + "s3://nasa-waterinsight/NLDAS3/forcing/daily/200101/NLDAS_FOR0010_D.A20010102.030.beta.nc", + "s3://nasa-waterinsight/NLDAS3/forcing/daily/200101/NLDAS_FOR0010_D.A20010103.030.beta.nc", +] + +bucket = "s3://nasa-waterinsight" +store = obstore.store.from_url(bucket, region="us-west-2", skip_signature=True) +registry = ObjectStoreRegistry({bucket: store}) +parser = HDFParser() + +vds = open_virtual_mfdataset( + urls, + parser=parser, + registry=registry, +) + +storage = icechunk.local_filesystem_storage( + "tests/fixtures/icechunk_virtual_accessible" +) + +config = icechunk.RepositoryConfig.default() +config.set_virtual_chunk_container( + icechunk.VirtualChunkContainer( + "s3://nasa-waterinsight/NLDAS3/forcing/daily/", + icechunk.s3_store(region="us-west-2"), + ) +) + +virtual_credentials = icechunk.containers_credentials( + { + "s3://nasa-waterinsight/NLDAS3/forcing/daily/": icechunk.s3_anonymous_credentials() + } +) + +repo = icechunk.Repository.open_or_create( + storage=storage, + config=config, + authorize_virtual_chunk_access=virtual_credentials, +) + +session = repo.writable_session("main") +vds.vz.to_icechunk(session.store) +session.commit("Committed test dataset with virtual chunks") +print("Done committing virtual dataset with publicly accessible chunk to icechunk repo") diff --git a/tests/fixtures/generate_test_zarr.py b/tests/fixtures/generate_test_zarr.py index 78900bee..66448207 100644 --- a/tests/fixtures/generate_test_zarr.py +++ b/tests/fixtures/generate_test_zarr.py @@ -1,4 +1,4 @@ -"""Create zarr fixture.""" +"""Create zarr fixtures for v2 and v3.""" import numpy as np import xarray as xr @@ -8,31 +8,32 @@ time_dim = 10 lat_dim = 36 lon_dim = 72 -chunk_size = (10, 10, 10) +chunk_size = {"time": 10, "lat": 10, "lon": 10} # Create coordinates time = np.arange(time_dim) -lat = np.linspace(-90 + res / 2, 90 - res / 2, lat_dim) -lon = np.linspace(-180 + res / 2, 180 - res / 2, lon_dim) +lat = np.linspace(-90.0 + res / 2, 90.0 - res / 2, lat_dim) +lon = np.linspace(-180.0 + res / 2, 180.0 - res / 2, lon_dim) +dtype = np.float64 # Initialize variables with random data CDD0 = xr.DataArray( - np.random.rand(time_dim, lat_dim, lon_dim).astype(np.uint8), + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), dims=("time", "lat", "lon"), name="CDD0", ) DISPH = xr.DataArray( - np.random.rand(time_dim, lat_dim, lon_dim).astype(np.uint8), + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), dims=("time", "lat", "lon"), name="DISPH", ) FROST_DAYS = xr.DataArray( - np.random.rand(time_dim, lat_dim, lon_dim).astype(np.uint8), + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), dims=("time", "lat", "lon"), name="FROST_DAYS", ) GWETPROF = xr.DataArray( - np.random.rand(time_dim, lat_dim, lon_dim).astype(np.uint8), + np.random.rand(time_dim, lat_dim, lon_dim).astype(dtype), dims=("time", "lat", "lon"), name="GWETPROF", ) @@ -49,4 +50,17 @@ ) # Save dataset to a local Zarr store -ds.to_zarr("tests/fixtures/test_zarr_store.zarr", mode="w") +ds.to_zarr( + "tests/fixtures/zarr_store_v3.zarr", + mode="w", + zarr_format=3, + consolidated=False, +) + +# Save dataset to a local Zarr store +ds.to_zarr( + "tests/fixtures/zarr_store_v2.zarr", + mode="w", + zarr_format=2, + consolidated=True, +) diff --git a/tests/fixtures/icechunk_native/chunks/06TV2NY13DRQ6SN7H4S0 b/tests/fixtures/icechunk_native/chunks/06TV2NY13DRQ6SN7H4S0 new file mode 100644 index 00000000..8e27754e Binary files /dev/null and b/tests/fixtures/icechunk_native/chunks/06TV2NY13DRQ6SN7H4S0 differ diff --git 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and b/tests/fixtures/icechunk_virtual_accessible/snapshots/80FX0M404MCT0R3665E0 differ diff --git a/tests/fixtures/icechunk_virtual_accessible/transactions/80FX0M404MCT0R3665E0 b/tests/fixtures/icechunk_virtual_accessible/transactions/80FX0M404MCT0R3665E0 new file mode 100644 index 00000000..82b00475 Binary files /dev/null and b/tests/fixtures/icechunk_virtual_accessible/transactions/80FX0M404MCT0R3665E0 differ diff --git a/tests/fixtures/responses/icechunk_native_histogram.json b/tests/fixtures/responses/icechunk_native_histogram.json new file mode 100644 index 00000000..520bb04b --- /dev/null +++ b/tests/fixtures/responses/icechunk_native_histogram.json @@ -0,0 +1,42 @@ +[ +{ + "bucket": [0.0007906359070823932, 0.10060333282002616], + "value": 278 +}, +{ + "bucket": [0.10060333282002616, 0.20041602973296993], + "value": 229 +}, +{ + "bucket": [0.20041602973296993, 0.3002287266459137], + "value": 265 +}, +{ + "bucket": [0.3002287266459137, 0.40004142355885747], + "value": 298 +}, +{ + "bucket": [0.40004142355885747, 0.4998541204718012], + "value": 257 +}, +{ + "bucket": [0.4998541204718012, 0.599666817384745], + "value": 245 +}, +{ + "bucket": [0.599666817384745, 0.6994795142976887], + "value": 252 +}, +{ + "bucket": [0.6994795142976887, 0.7992922112106325], + "value": 244 +}, +{ + "bucket": [0.7992922112106325, 0.8991049081235764], + "value": 242 +}, +{ + "bucket": [0.8991049081235764, 0.99891760503652], + "value": 282 +} +] diff --git a/tests/fixtures/responses/icechunk_native_info.json b/tests/fixtures/responses/icechunk_native_info.json new file mode 100644 index 00000000..f2a45e59 --- /dev/null +++ b/tests/fixtures/responses/icechunk_native_info.json @@ -0,0 +1,14 @@ +{ + "bounds": [-180.0, -90.0, 180.0, 90.0], + "band_metadata": [["b1", {}]], + "band_descriptions": [["b1", "0"]], + "dtype": "float64", + "nodata_type": "Nodata", + "height": 36, + "count": 1, + "width": 72, + "attrs": {}, + "crs": "http://www.opengis.net/def/crs/EPSG/0/4326", + "dimensions": ["y", "x"], + "name": "CDD0" +} diff --git a/tests/fixtures/responses/test_zarr_store_zarr_tilejson.json b/tests/fixtures/responses/icechunk_native_tilejson.json similarity index 67% rename from tests/fixtures/responses/test_zarr_store_zarr_tilejson.json rename to tests/fixtures/responses/icechunk_native_tilejson.json index 497b8ff6..41927a87 100644 --- a/tests/fixtures/responses/test_zarr_store_zarr_tilejson.json +++ b/tests/fixtures/responses/icechunk_native_tilejson.json @@ -1,9 +1,9 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ - "http://testserver/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?url=tests%2Ffixtures%2Ftest_zarr_store.zarr&variable=CDD0&decode_times=false&sel=time%3D0" + "http://testserver/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?url=tests%2Ffixtures%2Ficechunk_native&variable=CDD0&decode_times=false&sel=time%3D0" ], "minzoom": 0, "maxzoom": 0, diff --git a/tests/fixtures/responses/icechunk_virtual_accessible_histogram.json b/tests/fixtures/responses/icechunk_virtual_accessible_histogram.json new file mode 100644 index 00000000..e7c33b48 --- /dev/null +++ b/tests/fixtures/responses/icechunk_virtual_accessible_histogram.json @@ -0,0 +1,42 @@ +[ + { + "bucket": [126.3478012084961, 158.7461265563965], + "value": 610382 + }, + { + "bucket": [158.7461265563965, 191.1444519042969], + "value": 4513028 + }, + { + "bucket": [191.1444519042969, 223.54277725219725], + "value": 7084716 + }, + { + "bucket": [223.54277725219725, 255.94110260009765], + "value": 7813948 + }, + { + "bucket": [255.94110260009765, 288.33942794799805], + "value": 3784551 + }, + { + "bucket": [288.33942794799805, 320.7377532958984], + "value": 1173699 + }, + { + "bucket": [320.7377532958984, 353.1360786437988], + "value": 587492 + }, + { + "bucket": [353.1360786437988, 385.5344039916992], + "value": 548761 + }, + { + "bucket": [385.5344039916992, 417.9327293395996], + "value": 1071600 + }, + { + "bucket": [417.9327293395996, 450.3310546875], + "value": 57403 + } +] \ No newline at end of file diff --git a/tests/fixtures/responses/icechunk_virtual_accessible_info.json b/tests/fixtures/responses/icechunk_virtual_accessible_info.json new file mode 100644 index 00000000..fb18f025 --- /dev/null +++ b/tests/fixtures/responses/icechunk_virtual_accessible_info.json @@ -0,0 +1,39 @@ +{ + "bounds": [ + -168.9999951170962, + 7.000000114825381, + -51.99999725350927, + 71.99999511680303 + ], + "crs": "http://www.opengis.net/def/crs/EPSG/0/4326", + "band_metadata": [ + [ + "b1", + {} + ] + ], + "band_descriptions": [ + [ + "b1", + "1.0" + ] + ], + "dtype": "float64", + "nodata_type": "Nodata", + "name": "LWdown", + "count": 1, + "width": 11700, + "height": 6500, + "dimensions": [ + "y", + "x" + ], + "attrs": { + "units": "W m-2", + "standard_name": "Surface incident longwave radiation", + "long_name": "Longwave radiation flux downwards (surface)", + "cell_methods": "time: mean", + "vmin": 126.3478012084961, + "vmax": 450.3310546875 + } +} \ No newline at end of file diff --git a/tests/fixtures/responses/icechunk_virtual_accessible_tilejson.json b/tests/fixtures/responses/icechunk_virtual_accessible_tilejson.json new file mode 100644 index 00000000..297b1005 --- /dev/null +++ b/tests/fixtures/responses/icechunk_virtual_accessible_tilejson.json @@ -0,0 +1,21 @@ +{ + "tilejson": "3.0.0", + "version": "1.0.0", + "scheme": "xyz", + "tiles": [ + "http://testserver/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?url=tests%2Ffixtures%2Ficechunk_virtual_accessible&variable=LWdown&decode_times=false&sel=time%3D1.0" + ], + "minzoom": 1, + "maxzoom": 7, + "bounds": [ + -168.9999951170962, + 7.000000114825381, + -51.99999725350927, + 71.99999511680303 + ], + "center": [ + -110.49999618530273, + 39.49999761581421, + 1 + ] +} \ No newline at end of file diff --git a/tests/fixtures/responses/pyramid_zarr_tilejson.json b/tests/fixtures/responses/pyramid_zarr_tilejson.json index 0b0ac3e2..955219bc 100644 --- a/tests/fixtures/responses/pyramid_zarr_tilejson.json +++ b/tests/fixtures/responses/pyramid_zarr_tilejson.json @@ -1,5 +1,5 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ diff --git a/tests/fixtures/responses/reference_json_tilejson.json b/tests/fixtures/responses/reference_json_tilejson.json index d10ea414..27b6af9c 100644 --- a/tests/fixtures/responses/reference_json_tilejson.json +++ b/tests/fixtures/responses/reference_json_tilejson.json @@ -1,5 +1,5 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ diff --git a/tests/fixtures/responses/reference_tilejson.json b/tests/fixtures/responses/reference_tilejson.json index cf7099b1..707a2a38 100644 --- a/tests/fixtures/responses/reference_tilejson.json +++ b/tests/fixtures/responses/reference_tilejson.json @@ -1,5 +1,5 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ diff --git a/tests/fixtures/responses/refernce_tilejson.json b/tests/fixtures/responses/refernce_tilejson.json index 976a619b..26962a10 100644 --- a/tests/fixtures/responses/refernce_tilejson.json +++ b/tests/fixtures/responses/refernce_tilejson.json @@ -1,5 +1,5 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ diff --git a/tests/fixtures/responses/test_CDD0_tilejson.json b/tests/fixtures/responses/test_CDD0_tilejson.json index 242819b9..cf8b0ae8 100644 --- a/tests/fixtures/responses/test_CDD0_tilejson.json +++ b/tests/fixtures/responses/test_CDD0_tilejson.json @@ -1,5 +1,5 @@ { - "tilejson": "2.2.0", + "tilejson": "3.0.0", "version": "1.0.0", "scheme": "xyz", "tiles": [ diff --git a/tests/fixtures/responses/test_zarr_store_info.json b/tests/fixtures/responses/test_zarr_store_info.json deleted file mode 100644 index b8e44170..00000000 --- a/tests/fixtures/responses/test_zarr_store_info.json +++ /dev/null @@ -1,12 +0,0 @@ -{ - "bounds": [-180, 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