Merge pull request #47 from deepnote/hannes/pla-3290-fix-r-library-installations

Fix R dependency installs

Author: hc2p

ir/ir-base/install_R_source.sh

@@ -37,6 +37,7 @@ fi
 apt-get install -y --no-install-recommends \
     bash-completion \
     ca-certificates \
+    curl \
     file \
     fonts-texgyre \
     g++ \
@@ -61,7 +62,7 @@ apt-get install -y --no-install-recommends \
     zip \
     zlib1g
 
-BUILDDEPS="curl \
+BUILDDEPS="\
     default-jdk \
     devscripts \
     libbz2-dev \
@@ -143,7 +144,7 @@ make clean
 
 ## Add a library directory (for user-installed packages)
 mkdir -p "${R_HOME}/site-library"
-chown root:staff "${R_HOME}/site-library"
+#chown root:staff "${R_HOME}/site-library"
 chmod g+ws "${R_HOME}/site-library"
 
 ## Fix library path

ir/ir-with-libs/Dockerfile.ir

@@ -3,19 +3,63 @@ ARG CIRCLE_PULL_REQUEST
 
 FROM deepnote/ir:${R_VERSION}${CIRCLE_PULL_REQUEST:+-ra-${CIRCLE_PULL_REQUEST##*/}}
 
-# Install the R libraries
-RUN R -e "install.packages('tidyverse', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('data.table', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('RSQLite', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('remotes', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('reticulate', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('igraph', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('plotly', repos='https://cloud.r-project.org', dependencies=TRUE)"
-
-
 # Workaround for Java to install correctly
 RUN mkdir -p /usr/share/man/man1/
 
-RUN R -e "install.packages('rgl', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('hdf5r', repos='https://cloud.r-project.org', dependencies=TRUE)"
-RUN R -e "install.packages('rJava', repos='https://cloud.r-project.org', dependencies=TRUE)"
+# Install R lib dependencies
+ENV BUILDDEPS="\
+default-jdk \
+devscripts \
+libbz2-dev \
+libcairo2-dev \
+libcurl4-openssl-dev \
+libgit2-dev \
+libicu-dev \
+libjpeg-dev \
+liblzma-dev \
+libmagick++-dev \
+libpango1.0-dev \
+libpcre2-dev \
+libpng-dev \
+libreadline-dev \
+librsvg2-dev \
+libtiff5-dev \
+libudunits2-dev \
+libv8-dev \
+libx11-dev \
+libxml2-dev \
+libxt-dev \
+perl \
+rsync \
+subversion \
+tcl-dev \
+texinfo \
+texlive-extra-utils \
+texlive-fonts-extra \
+texlive-fonts-recommended \
+texlive-latex-extra \
+texlive-latex-recommended \
+tk-dev \
+wget \
+x11proto-core-dev \
+xauth \
+xfonts-base \
+xvfb \
+zlib1g-dev"
+
+RUN apt-get update && apt-get install -y ${BUILDDEPS} \
+  && \
+  # Install the R libraries
+  R -e "install.packages('tidyverse', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('data.table', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('RSQLite', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('remotes', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('reticulate', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('igraph', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('plotly', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('rgl', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('hdf5r', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  R -e "install.packages('rJava', repos='https://cloud.r-project.org', dependencies=TRUE)" && \
+  apt-get clean && \
+  apt-get remove --purge -y ${BUILDDEPS} && \
+	rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*