chore(docs): Clean up readme and contributing guide (#14)

* chore(docs): Clean up readme and contributing guide

* chore(docs): Update readme with CLI quickstart instead of local dev

* chore: Incorporate PR review suggestions

* chore(docs): improve suggestion to try extensions first

Co-authored-by: James Hobbs <15235276+jamesbhobbs@users.noreply.github.com>

* chore(docs): remove trailing space

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

---------

Co-authored-by: James Hobbs <15235276+jamesbhobbs@users.noreply.github.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

Author: 3 people

CONTRIBUTING.md

@@ -0,0 +1,245 @@
+# Contributing
+
+All contributions are highly appreciated! 
+Start by [forking the repository](https://github.com/deepnote/deepnote-toolkit/fork) on GitHub and setting up Deepnote Toolkit for local development.
+
+## Local development setup
+
+#### Option 1: Using mise (Recommended)
+
+[mise](https://mise.jdx.dev/) automatically manages Python, Java, and other tool versions:
+
+1. Install mise: [Getting started](https://mise.jdx.dev/getting-started.html)
+2. Run setup:
+
+    ```bash
+    mise install        # Installs Python 3.12 and Java 11
+    mise run setup      # Installs dependencies and pre-commit hooks
+    ```
+
+#### Option 2: Manual setup
+
+1. Install poetry: [Installation](https://python-poetry.org/docs/#installation)
+2. Install Java 11 (required for PySpark tests):
+    - macOS: `brew install openjdk@11`
+    - Ubuntu/Debian: `sudo apt-get install openjdk-11-jdk`
+    - RHEL/Fedora: `sudo dnf install java-11-openjdk-devel`
+3. Set up venv for development package:
+
+    ```bash
+    # If Python 3.10 is available, point Poetry to it
+    $ poetry env use 3.10
+    ```
+
+4. Verify the virtual environment location:
+
+    ```bash
+    $ poetry env info
+    ```
+
+5. Install dependencies:
+
+    ```bash
+    $ poetry install
+    ```
+
+6. Install Poe Poetry add-on:
+
+    ```bash
+    $ poetry self add 'poethepoet[poetry_plugin]'
+    ```
+
+7. Install pre-commit hooks:
+
+    ```bash
+    $ poetry poe setup-hooks
+    ```
+
+8. Verify installation:
+
+    ```bash
+    $ poetry poe lint
+    $ poetry poe format
+    ```
+
+### Setup troubleshooting
+
+1. If `poetry install` fails with error `library 'ssl' not found`:
+
+    ```bash
+    env LDFLAGS="-I/opt/homebrew/opt/openssl/include -L/opt/homebrew/opt/openssl/lib" poetry install
+    ```
+
+2. If `poetry install` fails installing `pymssql`, install `freetds` via Homebrew.
+
+## Testing
+
+Tests run against all supported Python versions using nox in Docker for reproducible environments.
+
+### Local Testing
+
+#### Using mise (Recommended)
+
+```bash
+# Run unit tests (no coverage by default)
+mise run test
+
+# Run unit tests with coverage
+mise run test:coverage
+
+# Run tests quickly without nox/coverage overhead
+mise run test:quick tests/unit/test_file.py
+mise run test:quick tests/unit/test_file.py::TestClass::test_method -v
+
+# Pass custom arguments (including --coverage)
+mise run test -- --coverage tests/unit/test_file.py
+```
+
+#### Using nox directly
+
+```bash
+# Run unit tests without coverage
+poetry run nox -s unit
+
+# Run unit tests with coverage
+poetry run nox -s unit -- --coverage
+
+# Run specific test file
+poetry run nox -s unit -- tests/unit/test_file.py
+```
+
+#### Using Docker
+```bash
+# Run unit tests
+TEST_TYPE="unit" TOOLKIT_VERSION="local-build" ./bin/test
+
+# Run integration tests
+TEST_TYPE="integration" TOOLKIT_VERSION="local-build" TOOLKIT_INDEX_URL="http://localhost:8000" ./bin/test
+
+# Or use the test-local script for both unit tests and integration tests
+./bin/test-local
+
+# Run a specific file with test-local
+./bin/test-local tests/unit/test_file.py
+
+# ... or specific test
+./bin/test-local tests/unit/test_file.py::TestClass::test_method
+```
+
+### Adding Dependencies
+
+- Kernel dependencies: Add to `[tool.poetry.dependencies]` in pyproject.toml
+
+```bash
+# Add a package to kernel bundle (available in notebooks)
+$ poetry add pandas
+
+# Add a package with specific version
+$ poetry add "pandas>=2.0.0"
+```
+
+```bash
+# Add a development dependency
+$ poetry add --group dev pytest
+```
+
+After adding dependencies, run tests to verify compatibility:
+
+```bash
+$ ./bin/test-local
+```
+
+## Development Workflow for Deepnote maintainers
+
+### Using in Deepnote Projects
+
+When you push a commit, a new version of `deepnote/jupyter-for-local` is built with your commit hash (shortened!). Use it in projects by updating `common.yml`:
+
+```yaml
+jupyter:
+  image: "deepnote/jupyter-for-local:SHORTENED_COMMIT_SHA"
+```
+
+Alternatively, to develop against a local copy of Deepnote Toolkit, first run this command to build the image:
+
+```bash
+docker build \
+  --build-arg "FROM_PYTHON_TAG=3.11" \
+  -t deepnote/deepnote-toolkit-local-hotreload \
+  -f ./dockerfiles/jupyter-for-local-hotreload/Dockerfile .
+```
+
+Then start the container:
+
+```bash
+# To include server logs in the output add this argument
+#  -e WITH_SERVER_LOGS=1 \
+
+# Some toolkit features (e.g. feature flags support) require
+# DEEPNOTE_PROJECT_ID to be set to work correctly. Add this
+# argument with your project id
+# -e DEEPNOTE_PROJECT_ID=981af2c1-fe8b-41b7-94bf-006b74cf0641 \
+
+docker run \
+  -v "$(pwd)":/deepnote-toolkit \
+  -v /tmp/deepnote-mounts:/deepnote-mounts:shared \
+  -p 8888:8888 \
+  -p 2087:2087 \
+  -p 8051:8051 \
+  -w /deepnote-toolkit \
+  --add-host=localstack.dev.deepnote.org:host-gateway \
+  --rm \
+  --name deepnote-toolkit-local-hotreload-container \
+    deepnote/deepnote-toolkit-local-hotreload
+```
+
+This will start a container with Deepnote Toolkit mounted inside and expose all required ports. If you change code that runs in the kernel (e.g. you updated the DataFrame formatter), you only need to restart the kernel from Deepnote's UI. If you update code that starts Jupyter itself, you need to restart the container. And if you add or modify dependencies you need to rebuild the image.
+
+Now, you need to modify `common.yml` in the Deepnote app. First, replace `jupyter` service with noop image:
+
+```yml
+jupyter:
+    image: 'screwdrivercd/noop-container'
+```
+
+And change `JUPYTER_HOST` variable of executor to point to host machine:
+
+```yml
+executor:
+  environment:
+    JUPYTER_HOST: host.docker.internal
+```
+
+### Review Applications
+
+Each PR creates a review application for testing. Access it via GitHub checks. Monitor logs in Grafana:
+
+```
+{pod="p-PROJECT_ID", container="notebook"}
+```
+
+
+### Docker Usage
+
+We use Docker to ensure reproducible environments due to Jupyter libraries' binary dependencies:
+
+- `builder.Dockerfile`: Creates Python package bundles for different versions (3.9-3.12), generates kernel and server bundles, and packages the toolkit for distribution using Poetry.
+
+- `test.Dockerfile`: Provides consistent test environment for running unit and integration tests across Python versions using nox. Used both locally and in CI/CD pipeline.
+
+- `jupyter-for-local.Dockerfile`: Creates development environment with Jupyter integration, used for local development from docker-compose used in main monorepo.
+
+### Production Releases
+
+To release a new version to production:
+
+1. Merge your changes to main. This will automatically trigger a GitHub Actions workflow that runs the test suite and a staging deployment.
+2. Trigger a new [GitHub Release](https://github.com/deepnote/deepnote-toolkit/releases) in the GitHub UI.
+3. Monitor [the GitHub Actions workflows](https://github.com/deepnote/deepnote-toolkit/actions) and ensure a successful production deployment.
+
+Note: The production release pipeline automatically creates two PRs in the ops and app-config repositories:
+
+- A staging PR that updates staging values and is auto-merged
+- A production PR that updates production values and requires manual approval and merge
+
+Important: Always test the changes in the staging environment before approving and merging the production PR to ensure everything works as expected.