@@ -27,41 +27,29 @@ of the following options for your operating system:
2727
2828``` {note}
2929If you are using Windows, you will have to install the [Windows Subsystem for Linux 2](https://learn.microsoft.com/en-us/windows/wsl/install) (WSL2).
30- Visit the `cwltool` [documentation](https://github.com/common-workflow-language/cwltool/blob/main/README.rst #ms-windows-users)
30+ Visit the `cwltool` [documentation](https://cwltool.readthedocs.io/en/latest/ #ms-windows-users)
3131for details on installing WSL2.
3232Your operating system also needs internet access and a recent version of Python (3.6+).
3333```
3434
3535## CWL Runner
3636
3737% https://github.com/common-workflow-language/user_guide/issues/166
38- % https://github.com/common-workflow-language/user_guide/issues/64
3938% https://www.synapse.org/#!Synapse:syn2813589/wiki/401462
4039
4140The first thing you will need for running CWL workflows is a CWL runner.
4241` cwltool ` is a Python Open Source project maintained by the CWL community. It
4342is also the CWL reference runner, which means it must support everything in the
4443current CWL specification, {{ cwl_version }}.
4544
46- ` cwltool ` can be installed with ` pip ` . We recommend using a virtual environment
47- like ` venv ` or ` conda ` . The following commands will create and activate a Python
48- virtual environment using the ` venv ` module, and install ` cwltool ` in that
49- environment:
50-
51- ``` {code-block} console
52- :name: installing-cwltool-with-pip-and-venv
53- :caption: Installing `cwltool` with `pip` and `venv`.
54-
55- $ python3 -m venv venv
56- $ source venv/bin/activate
57- $ (venv) pip install -U pip setuptools wheel
58- $ (venv) pip install cwltool
59- ```
45+ ` cwltool ` can be installed with ` pip ` , ` apt ` , or ` conda ` . We recommend using a virtual environment
46+ like ` venv ` or ` conda ` .
6047
6148``` {note}
62- Visit the `cwltool` [documentation](https://github.com/common-workflow-language/cwltool #install)
63- for other ways to install `cwltool` with `apt` and `conda `.
49+ Visit the `cwltool` [documentation](https://cwltool.readthedocs.io/en/latest/ #install)
50+ for details on installing `cwltool`.
6451```
52+
6553Let's use a simple CWL tool description ` true.cwl ` with ` cwltool ` .
6654
6755``` {literalinclude} /_includes/cwl/true.cwl
0 commit comments