add default value for compute_checksum

Author: mr-c

cwltool/executors.py

@@ -69,10 +69,10 @@ def execute(self, t,  # type: Process
         self.run_jobs(t, job_order_object, logger, **kwargs)
 
         if self.final_output and self.final_output[0] and finaloutdir:
-            self.final_output[0] = relocateOutputs(self.final_output[0], finaloutdir,
-                                                   self.output_dirs, kwargs.get("move_outputs"),
-                                                   kwargs["make_fs_access"](""),
-                                                   kwargs["compute_checksum"])
+            self.final_output[0] = relocateOutputs(
+                self.final_output[0], finaloutdir, self.output_dirs,
+                kwargs.get("move_outputs"), kwargs["make_fs_access"](""),
+                kwargs.get("compute_checksum", True))
 
         if kwargs.get("rm_tmpdir"):
             cleanIntermediate(self.output_dirs)
@@ -120,8 +120,8 @@ def __init__(self):
         self.exceptions = []
 
     def run_job(self,
-                job, # type:  JobBase
-                **kwargs  # type:  Any
+                job,      # type: JobBase
+                **kwargs  # type: Any
                 ):
         # type: (...) -> None
         def runner():

cwltool/process.py

@@ -256,8 +256,14 @@ def collectFilesAndDirs(obj, out):
             collectFilesAndDirs(l, out)
 
 
-def relocateOutputs(outputObj, outdir, output_dirs, action, fs_access, compute_checksum):
-    # type: (Union[Dict[Text, Any], List[Dict[Text, Any]]], Text, Set[Text], Text, StdFsAccess, bool) -> Union[Dict[Text, Any], List[Dict[Text, Any]]]
+def relocateOutputs(outputObj,             # type: Union[Dict[Text, Any],List[Dict[Text, Any]]]
+                    outdir,                # type: Text
+                    output_dirs,           # type: Set[Text]
+                    action,                # type: Text
+                    fs_access,             # type: StdFsAccess
+                    compute_checksum=True  # type: bool
+                    ):
+    # type: (...) -> Union[Dict[Text, Any], List[Dict[Text, Any]]]
     adjustDirObjs(outputObj, functools.partial(get_listing, fs_access, recursive=True))
 
     if action not in ("move", "copy"):