codespell

Author: mr-c

Makefile

@@ -111,9 +111,14 @@ pydocstyle_report.txt: $(PYSOURCES)
 diff_pydocstyle_report: pydocstyle_report.txt
 	diff-quality --compare-branch=main --violations=pydocstyle --fail-under=100 $^
 
-## codespell              : check for common misspellings
-codespell:
-	codespell -w $(shell git ls-files | grep -v cwltool/schemas | grep -v cwltool/jshint/ | grep -v mypy-stubs)
+## codespell-check        : check for common misspellings
+codespell-check:
+	@codespell $(shell git ls-files | grep -v cwltool/schemas | grep -v cwltool/jshint/ | grep -v mypy-stubs) \
+		|| (echo Probable typo foun. Run \"make codespell-fix\" to accept suggested fixes, or add the word to the ignore list in setup.cfg ; exit 1)
+
+## codespell-fix          : fix common misspellings
+codespell-fix:
+	@codespell -w $(shell git ls-files | grep -v cwltool/schemas | grep -v cwltool/jshint/ | grep -v mypy-stubs)
 
 ## format                 : check/fix all code indentation and formatting (runs black)
 format:

cwltool/workflow.py

@@ -42,7 +42,7 @@
 
 
 def default_make_tool(toolpath_object: CommentedMap, loadingContext: LoadingContext) -> Process:
-    """Instatiate the given CWL Process."""
+    """Instantiate the given CWL Process."""
     if not isinstance(toolpath_object, MutableMapping):
         raise WorkflowException("Not a dict: '%s'" % toolpath_object)
     if "class" in toolpath_object:

setup.cfg

@@ -9,4 +9,4 @@ use_parentheses = True
 line_length = 88
 
 [codespell]
-ignore-words-list=ORE,ore,RO,ro
+ignore-words-list=ORE,ore,RO,ro,recuse

tox.ini

@@ -67,7 +67,7 @@ commands_pre =
 commands =
   py3{6,7,8,9,10,11}-unit: make coverage-report coverage.xml PYTEST_EXTRA={posargs}
   py3{6,7,8,9,10,11}-bandit: bandit -r cwltool
-  py3{6,7,8,9,10,11}-lint: make flake8 format-check codespell
+  py3{6,7,8,9,10,11}-lint: make flake8 format-check codespell-check
   py3{7,8,9,10,11}-mypy: make mypy mypyc PYTEST_EXTRA={posargs}
   py37-mypy: make mypy_3.6
   py311-shellcheck: make shellcheck