fix codespell-discovered typos

Author: mr-c

cwltool/context.py

@@ -43,7 +43,7 @@
 
 
 class ContextBase:
-    """Shared kwargs based initilizer for :py:class:`RuntimeContext` and :py:class:`LoadingContext`."""
+    """Shared kwargs based initializer for :py:class:`RuntimeContext` and :py:class:`LoadingContext`."""
 
     def __init__(self, kwargs: Optional[Dict[str, Any]] = None) -> None:
         """Initialize."""

tests/test_toolargparse.py

@@ -180,7 +180,7 @@ def test_dont_require_inputs(tmp_path: Path) -> None:
 
 
 def test_argparser_with_doc() -> None:
-    """The `desription` field is set if `doc` field is provided."""
+    """The `description` field is set if `doc` field is provided."""
     loadingContext = LoadingContext()
     tool = load_tool(get_data("tests/with_doc.cwl"), loadingContext)
     p = argparse.ArgumentParser()
@@ -189,7 +189,7 @@ def test_argparser_with_doc() -> None:
 
 
 def test_argparser_without_doc() -> None:
-    """The `desription` field is None if `doc` field is not provided."""
+    """The `description` field is None if `doc` field is not provided."""
     loadingContext = LoadingContext()
     tool = load_tool(get_data("tests/without_doc.cwl"), loadingContext)
     p = argparse.ArgumentParser()

tests/wf/schemadef-bug-1473.cwl

@@ -449,7 +449,7 @@
                                     "name": "#settings-by-samples__1.0.0.yaml/settings-by-samples/samples"
                                 },
                                 {
-                                    "label": "settings by override cylces",
+                                    "label": "settings by override cycles",
                                     "doc": "Additional bcl convert settings\n",
                                     "type": [
                                         "null",