From 74145ac4bc8268a97972efd14c4e56f6b0ee8bd4 Mon Sep 17 00:00:00 2001 From: llbbl Date: Mon, 1 Sep 2025 15:17:40 +0000 Subject: [PATCH] feat: set up complete Python testing infrastructure - Set up Poetry as package manager with pyproject.toml configuration - Migrated existing dependencies from requirements.txt to Poetry format - Added pytest, pytest-cov, and pytest-mock as testing dependencies - Created comprehensive testing directory structure (tests/unit/, tests/integration/) - Configured pytest with coverage reporting (80% threshold, HTML/XML output) - Added custom markers for unit, integration, and slow tests - Created conftest.py with shared fixtures for ML/AI testing (mocks for wandb, tensorflow, etc.) - Set up Poetry scripts for `poetry run test` and `poetry run tests` commands - Updated .gitignore with testing-related patterns and build artifacts - Added validation tests to verify infrastructure setup The testing infrastructure is now ready for developers to start writing tests. --- .gitignore | 79 + poetry.lock | 3679 +++++++++++++++++++++++++++++++++ pyproject.toml | 78 + tests/__init__.py | 0 tests/conftest.py | 190 ++ tests/integration/__init__.py | 0 tests/test_infrastructure.py | 151 ++ tests/unit/__init__.py | 0 8 files changed, 4177 insertions(+) create mode 100644 .gitignore create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 tests/__init__.py create mode 100644 tests/conftest.py create mode 100644 tests/integration/__init__.py create mode 100644 tests/test_infrastructure.py create mode 100644 tests/unit/__init__.py diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..1387ef8 --- /dev/null +++ b/.gitignore @@ -0,0 +1,79 @@ +# Testing +.pytest_cache/ +.coverage +htmlcov/ +coverage.xml +.tox/ +.nox/ + +# Claude Code settings +.claude/* + +# Python +__pycache__/ +*.py[cod] +*$py.class +*.so +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ 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= "2.8" +typer = "0.4.1" +docopt = "0.6.2" +huggingface-hub = "^0.15.0" + +[tool.poetry.group.test.dependencies] +pytest = "^7.4.0" +pytest-cov = "^4.1.0" +pytest-mock = "^3.11.0" + +[tool.poetry.scripts] +test = "pytest:main" +tests = "pytest:main" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = ["test_*.py", "*_test.py"] +python_classes = ["Test*"] +python_functions = ["test_*"] +addopts = [ + "--strict-markers", + "--strict-config", + "--verbose", + "--cov=pipeline", + "--cov=clouds", + "--cov-report=term-missing", + "--cov-report=html:htmlcov", + "--cov-report=xml:coverage.xml", + "--cov-fail-under=80", + "--cov-config=pyproject.toml" +] +markers = [ + "unit: Unit tests", + "integration: Integration tests", + "slow: Slow running tests" +] + +[tool.coverage.run] +source = ["pipeline", "clouds"] +omit = [ + "tests/*", + "*/test_*", + "*/__pycache__/*", + "*/migrations/*", + "*/venv/*", + "*/.venv/*" +] + +[tool.coverage.report] +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "@abstract" +] +show_missing = true +skip_covered = false + +[tool.coverage.html] +directory = "htmlcov" \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..81b73a0 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,190 @@ +""" +Shared pytest fixtures for the testing suite. + +This module contains common fixtures that can be used across all test modules. +""" + +import pytest +import tempfile +import shutil +from pathlib import Path +from unittest.mock import Mock, patch +import os + + +@pytest.fixture +def temp_dir(): + """Create a temporary directory that gets cleaned up after the test.""" + temp_path = tempfile.mkdtemp() + yield Path(temp_path) + shutil.rmtree(temp_path) + + +@pytest.fixture +def temp_file(): + """Create a temporary file that gets cleaned up after the test.""" + temp_fd, temp_path = tempfile.mkstemp() + os.close(temp_fd) + yield Path(temp_path) + if Path(temp_path).exists(): + Path(temp_path).unlink() + + +@pytest.fixture +def mock_wandb(): + """Mock wandb for tests that don't need actual logging.""" + try: + with patch('wandb.init') as mock_init, \ + patch('wandb.log') as mock_log, \ + patch('wandb.finish') as mock_finish: + mock_init.return_value = Mock() + yield { + 'init': mock_init, + 'log': mock_log, + 'finish': mock_finish + } + except ImportError: + # wandb not available, provide mock objects + yield { + 'init': Mock(), + 'log': Mock(), + 'finish': Mock() + } + + +@pytest.fixture +def mock_tensorflow(): + """Mock tensorflow imports for tests that don't need actual TF.""" + with patch.dict('sys.modules', { + 'tensorflow': Mock(), + 'tensorflow.keras': Mock(), + 'tensorflow.keras.models': Mock(), + 'tensorflow.keras.layers': Mock() + }): + yield + + +@pytest.fixture +def sample_params(): + """Sample parameters dictionary for testing.""" + return { + 'model': { + 'name': 'test_model', + 'layers': [128, 64, 32], + 'activation': 'relu' + }, + 'training': { + 'epochs': 10, + 'batch_size': 32, + 'learning_rate': 0.001 + }, + 'data': { + 'path': '/path/to/data', + 'train_split': 0.8, + 'val_split': 0.2 + } + } + + +@pytest.fixture +def sample_config_file(temp_dir): + """Create a sample configuration file for testing.""" + config_content = """ + model: + name: test_model + layers: [128, 64, 32] + activation: relu + + training: + epochs: 10 + batch_size: 32 + learning_rate: 0.001 + + data: + path: /path/to/data + train_split: 0.8 + val_split: 0.2 + """ + config_file = temp_dir / "config.yaml" + config_file.write_text(config_content) + return config_file + + +@pytest.fixture +def mock_huggingface_hub(): + """Mock Hugging Face Hub for tests.""" + with patch('huggingface_hub.login') as mock_login, \ + patch('huggingface_hub.upload_file') as mock_upload, \ + patch('huggingface_hub.download_file') as mock_download: + yield { + 'login': mock_login, + 'upload': mock_upload, + 'download': mock_download + } + + +@pytest.fixture +def mock_dvc(): + """Mock DVC operations for tests.""" + with patch('dvc.repo.Repo') as mock_repo: + mock_instance = Mock() + mock_repo.return_value = mock_instance + yield mock_instance + + +@pytest.fixture +def sample_data(): + """Sample data arrays for testing ML models.""" + import numpy as np + + # Generate sample training data + X_train = np.random.random((100, 10)) + y_train = np.random.randint(0, 2, (100,)) + + # Generate sample test data + X_test = np.random.random((20, 10)) + y_test = np.random.randint(0, 2, (20,)) + + return { + 'X_train': X_train, + 'y_train': y_train, + 'X_test': X_test, + 'y_test': y_test + } + + +@pytest.fixture(scope="session") +def test_env_vars(): + """Set up test environment variables for the session.""" + test_vars = { + 'WANDB_MODE': 'offline', + 'TF_CPP_MIN_LOG_LEVEL': '3', + 'PYTHONPATH': str(Path.cwd()) + } + + original_vars = {} + for key, value in test_vars.items(): + original_vars[key] = os.environ.get(key) + os.environ[key] = value + + yield test_vars + + # Restore original environment variables + for key, original_value in original_vars.items(): + if original_value is None: + os.environ.pop(key, None) + else: + os.environ[key] = original_value + + +@pytest.fixture +def mock_typer_app(): + """Mock Typer application for CLI testing.""" + from unittest.mock import Mock + return Mock() + + +@pytest.fixture(autouse=True) +def setup_test_environment(test_env_vars): + """Automatically set up the test environment for all tests.""" + pass \ No newline at end of file diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_infrastructure.py b/tests/test_infrastructure.py new file mode 100644 index 0000000..1a91fb0 --- /dev/null +++ b/tests/test_infrastructure.py @@ -0,0 +1,151 @@ +""" +Infrastructure validation tests. + +These tests verify that the testing infrastructure is properly set up +and all components are working correctly. +""" + +import pytest +import sys +from pathlib import Path + + +class TestInfrastructure: + """Test the testing infrastructure setup.""" + + def test_python_version(self): + """Verify Python version compatibility.""" + assert sys.version_info >= (3, 8), "Python 3.8+ required" + + def test_pytest_import(self): + """Verify pytest can be imported.""" + import pytest + assert pytest.__version__ + + def test_pytest_cov_import(self): + """Verify pytest-cov can be imported.""" + import pytest_cov + assert pytest_cov.__version__ + + def test_pytest_mock_import(self): + """Verify pytest-mock can be imported.""" + import pytest_mock + assert pytest_mock is not None + + def test_project_structure(self): + """Verify project directory structure.""" + root = Path.cwd() + + # Check main directories exist + assert (root / "pipeline").exists(), "pipeline directory should exist" + assert (root / "clouds").exists(), "clouds directory should exist" + assert (root / "tests").exists(), "tests directory should exist" + + # Check test subdirectories + assert (root / "tests" / "unit").exists(), "tests/unit directory should exist" + assert (root / "tests" / "integration").exists(), "tests/integration directory should exist" + + # Check __init__.py files + assert (root / "tests" / "__init__.py").exists(), "tests/__init__.py should exist" + assert (root / "tests" / "unit" / "__init__.py").exists(), "tests/unit/__init__.py should exist" + assert (root / "tests" / "integration" / "__init__.py").exists(), "tests/integration/__init__.py should exist" + + def test_conftest_fixtures(self): + """Verify conftest.py fixtures are available.""" + # These fixtures should be available in all tests + fixture_names = [ + 'temp_dir', + 'temp_file', + 'mock_wandb', + 'mock_tensorflow', + 'sample_params', + 'sample_config_file', + 'mock_huggingface_hub', + 'mock_dvc', + 'sample_data' + ] + + # Import conftest to check if fixtures are defined + from tests import conftest + + for fixture_name in fixture_names: + assert hasattr(conftest, fixture_name), f"Fixture {fixture_name} should be defined in conftest.py" + + +class TestFixtures: + """Test that fixtures work correctly.""" + + def test_temp_dir_fixture(self, temp_dir): + """Test temp_dir fixture creates and cleans up directories.""" + assert temp_dir.exists(), "Temporary directory should exist" + assert temp_dir.is_dir(), "Should be a directory" + + # Create a test file + test_file = temp_dir / "test.txt" + test_file.write_text("test content") + assert test_file.exists(), "Test file should be created" + + def test_temp_file_fixture(self, temp_file): + """Test temp_file fixture creates temporary files.""" + assert temp_file.exists(), "Temporary file should exist" + assert temp_file.is_file(), "Should be a file" + + # Write content to test file + temp_file.write_text("test content") + assert temp_file.read_text() == "test content" + + def test_sample_params_fixture(self, sample_params): + """Test sample_params fixture provides valid configuration.""" + assert isinstance(sample_params, dict), "Should be a dictionary" + assert 'model' in sample_params, "Should have model section" + assert 'training' in sample_params, "Should have training section" + assert 'data' in sample_params, "Should have data section" + + def test_sample_config_file_fixture(self, sample_config_file): + """Test sample_config_file fixture creates a valid YAML file.""" + assert sample_config_file.exists(), "Config file should exist" + assert sample_config_file.suffix == '.yaml', "Should be a YAML file" + + content = sample_config_file.read_text() + assert 'model:' in content, "Should contain model configuration" + assert 'training:' in content, "Should contain training configuration" + + def test_mock_wandb_fixture(self, mock_wandb): + """Test mock_wandb fixture provides mock objects.""" + assert 'init' in mock_wandb, "Should have init mock" + assert 'log' in mock_wandb, "Should have log mock" + assert 'finish' in mock_wandb, "Should have finish mock" + + def test_sample_data_fixture(self, sample_data): + """Test sample_data fixture provides ML data.""" + required_keys = ['X_train', 'y_train', 'X_test', 'y_test'] + for key in required_keys: + assert key in sample_data, f"Should have {key}" + assert sample_data[key] is not None, f"{key} should not be None" + + +@pytest.mark.unit +class TestMarkers: + """Test custom pytest markers.""" + + def test_unit_marker(self): + """Test that unit marker works.""" + assert True + + @pytest.mark.integration + def test_integration_marker(self): + """Test that integration marker works.""" + assert True + + @pytest.mark.slow + def test_slow_marker(self): + """Test that slow marker works.""" + assert True + + +def test_pytest_configuration(): + """Test pytest configuration is loaded correctly.""" + import pytest + + # Basic verification that pytest is working + assert True \ No newline at end of file diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 0000000..e69de29