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lines changed Original file line number Diff line number Diff line change 77- Added new ` recipe ` system to flowcraft along with 6 starting recipes.
88Recipes are pre-made and curated pipelines that address specific questions.
99To create a recipe, the ` -r <recipe_name> ` can be used. To list available
10- recipes, the ` --recipe-list ` and ` --recipe-list-short ` options were added.
10+ recipes, the ` --recipe-list ` and ` --recipe-list-short ` options were added.
1111
1212### Components changes
1313
@@ -16,7 +16,8 @@ resolution
1616- The ` abyss ` and ` spades ` components emit GFA in a secondary channel.
1717- The new ` bandage ` component can accept either FASTA from a primary channel
1818 or GFA from a secondary channel.
19- - Updated skesa to version 2.3.0
19+ - Updated skesa to version 2.3.0.
20+ - Updated mash based components for the latest version - 1.6.0-1.
2021
2122### New components
2223
Original file line number Diff line number Diff line change @@ -103,13 +103,13 @@ def __init__(self, **kwargs):
103103 self .directives = {
104104 "mashScreen" : {
105105 "container" : "flowcraft/mash-patlas" ,
106- "version" : "1.5.2 -1" ,
106+ "version" : "1.6.0 -1" ,
107107 "cpus" : 1 ,
108108 "memory" : "{ 4.GB * task.attempt }"
109109 },
110110 "mashOutputJson" : {
111111 "container" : "flowcraft/mash-patlas" ,
112- "version" : "1.5.2 -1" ,
112+ "version" : "1.6.0 -1" ,
113113 "cpus" : 1 ,
114114 "memory" : "'4GB'"
115115 }
@@ -154,7 +154,7 @@ def __init__(self, **kwargs):
154154 self .directives = {
155155 "mashSketchFasta" : {
156156 "container" : "flowcraft/mash-patlas" ,
157- "version" : "1.4. 1" ,
157+ "version" : "1.6.0- 1" ,
158158 "cpus" : 1 ,
159159 "memory" : "{ 4.GB * task.attempt }"
160160 },
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